Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CS873_RS03195 Genome accession   NZ_CP024610
Coordinates   657312..658376 (+) Length   354 a.a.
NCBI ID   WP_099974436.1    Uniprot ID   -
Organism   Lactobacillus terrae strain NIBRBAC000499792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 652312..663376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS873_RS03170 - 653211..654452 (+) 1242 WP_099974431.1 pitrilysin family protein -
  CS873_RS03175 - 654449..655171 (+) 723 WP_169922476.1 SDR family NAD(P)-dependent oxidoreductase -
  CS873_RS03180 - 655234..656067 (+) 834 WP_099974433.1 helix-turn-helix domain-containing protein -
  CS873_RS03185 pgsA 656088..656672 (+) 585 WP_099974434.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CS873_RS03190 - 656698..657228 (+) 531 WP_099974435.1 CinA family protein -
  CS873_RS03195 recA 657312..658376 (+) 1065 WP_099974436.1 recombinase RecA Machinery gene
  CS873_RS03200 rny 658519..660084 (+) 1566 WP_099974437.1 ribonuclease Y -
  CS873_RS03205 - 660189..661274 (+) 1086 WP_099974438.1 MraY family glycosyltransferase -
  CS873_RS03210 - 661291..661926 (-) 636 WP_099974439.1 YigZ family protein -
  CS873_RS03215 - 661955..663271 (+) 1317 WP_099974440.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38412.41 Da        Isoelectric Point: 4.5630

>NTDB_id=254220 CS873_RS03195 WP_099974436.1 657312..658376(+) (recA) [Lactobacillus terrae strain NIBRBAC000499792]
MVKDEREKALETAIKQIEKDFGKGAIMRMGEDLNTQVQTVSSGSLALDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKNGGTAAYIDAENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGDMG
DSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRSEQIKDGSDVIGN
RTKIKVVKNKVAPPFKVALVDIMYGHGISQTGELVDMAVEKDIIDKSGSWYSYNDERIGQGRENAKKYLSENQDKMLEIR
KAVREAYSMDKSTEEESSKDEVVTELIPDDDIEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=254220 CS873_RS03195 WP_099974436.1 657312..658376(+) (recA) [Lactobacillus terrae strain NIBRBAC000499792]
TTGGTCAAAGACGAAAGAGAAAAGGCTCTAGAAACAGCCATTAAACAAATTGAAAAGGATTTTGGTAAGGGAGCCATTAT
GAGAATGGGTGAGGACTTGAATACTCAAGTCCAAACTGTTTCTTCTGGATCATTGGCTTTGGATGATGCTCTTGGAGTAG
GTGGATTTCCACGAGGAAGAATTGTTGAAATCTATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTGCATGCTGTT
GCTGAAGTACAAAAAAATGGTGGTACAGCTGCATATATTGATGCTGAAAATGCTATGGATCCTGCCTATGCTACAGCATT
GGGTGTAAATATTGATGATTTACTATTGTCACAACCAGATACTGGAGAGCAAGGATTAGAAATAGCCGATGCACTAGTTT
CCAGTGGTGCCGTAGATATCGTTGTTGTTGATTCGGTTGCTGCTTTGGTACCACGAGCTGAAATTGAAGGTGACATGGGG
GACTCTCATGTTGGGTTGCAAGCTAGACTTATGTCACAGGCATTGCGTAAACTATCAGGTTCTATCAACAAAACAAAAAC
AATTGCACTATTTATCAACCAAATTCGTGAAAAAGTCGGAATTATGTTTGGAAATCCCGAGACTACTCCTGGTGGACGAG
CATTAAAATTTTATTCAACTATTCGTTTGGAAGTTAGAAGATCTGAACAAATTAAAGACGGATCAGATGTTATTGGTAAC
CGTACAAAAATAAAAGTTGTTAAAAATAAAGTTGCTCCTCCATTTAAGGTTGCTTTGGTGGATATTATGTATGGACATGG
TATTTCTCAAACTGGGGAACTAGTAGATATGGCCGTTGAAAAAGATATCATCGATAAAAGTGGATCATGGTATTCATACA
ATGATGAGAGAATTGGCCAAGGTAGAGAGAACGCCAAGAAGTATCTATCTGAAAATCAAGATAAGATGTTAGAAATTCGC
AAAGCTGTTCGTGAAGCTTACAGTATGGACAAGAGTACTGAAGAAGAGTCATCAAAGGATGAAGTAGTTACAGAATTAAT
TCCTGACGATGATATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.618

100

0.811
  recA Streptococcus pneumoniae R6

68.611

100

0.698
  recA Streptococcus pneumoniae Rx1

68.611

100

0.698
  recA Streptococcus pneumoniae D39

68.611

100

0.698
  recA Streptococcus pneumoniae TIGR4

68.611

100

0.698
  recA Bacillus subtilis subsp. subtilis str. 168

75

92.655

0.695
  recA Streptococcus mutans UA159

70.201

98.588

0.692
  recA Streptococcus mitis SK321

71.429

96.893

0.692
  recA Streptococcus mitis NCTC 12261

71.345

96.61

0.689
  recA Streptococcus pyogenes NZ131

72.256

92.655

0.669
  recA Lactococcus lactis subsp. cremoris KW2

71.429

92.938

0.664
  recA Neisseria gonorrhoeae MS11

64.198

91.525

0.588
  recA Neisseria gonorrhoeae MS11

64.198

91.525

0.588
  recA Neisseria gonorrhoeae strain FA1090

64.198

91.525

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

91.243

0.582
  recA Acinetobacter baylyi ADP1

58.96

97.74

0.576
  recA Vibrio cholerae strain A1552

57.55

99.153

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.55

99.153

0.571
  recA Ralstonia pseudosolanacearum GMI1000

65.372

87.288

0.571
  recA Glaesserella parasuis strain SC1401

57.471

98.305

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

92.655

0.559
  recA Helicobacter pylori strain NCTC11637

55.367

100

0.554
  recA Helicobacter pylori 26695

55.367

100

0.554
  recA Pseudomonas stutzeri DSM 10701

56.16

98.588

0.554
  recA Acinetobacter baumannii D1279779

60.559

90.96

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.537

92.655

0.542

Multiple sequence alignment