Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SARO_RS06380 Genome accession   NC_007794
Coordinates   1314279..1315349 (+) Length   356 a.a.
NCBI ID   WP_011444933.1    Uniprot ID   Q2G8V4
Organism   Novosphingobium aromaticivorans DSM 12444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1309279..1320349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARO_RS06355 (Saro_1270) - 1309682..1310332 (+) 651 WP_011444928.1 adenylate kinase -
  SARO_RS06360 (Saro_1271) - 1310380..1311117 (+) 738 WP_011444929.1 hypothetical protein -
  SARO_RS06365 (Saro_1272) gdhA 1311265..1312620 (+) 1356 WP_011444930.1 NADP-specific glutamate dehydrogenase -
  SARO_RS06370 (Saro_1273) - 1312675..1313148 (-) 474 WP_143004786.1 hypothetical protein -
  SARO_RS06375 (Saro_1274) - 1313066..1313875 (-) 810 WP_011444932.1 helix-turn-helix domain-containing protein -
  SARO_RS06380 (Saro_1275) recA 1314279..1315349 (+) 1071 WP_011444933.1 recombinase RecA Machinery gene
  SARO_RS06385 (Saro_1276) - 1315537..1316163 (+) 627 WP_011444934.1 glutathione S-transferase family protein -
  SARO_RS06390 (Saro_1277) - 1316192..1318252 (-) 2061 WP_011444935.1 elongation factor G -
  SARO_RS06395 (Saro_1278) - 1318409..1319236 (+) 828 WP_011444936.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38195.73 Da        Isoelectric Point: 5.5674

>NTDB_id=25419 SARO_RS06380 WP_011444933.1 1314279..1315349(+) (recA) [Novosphingobium aromaticivorans DSM 12444]
MAAQLKLIEEGKTKDMDRQKALDAALAQIDRAFGKGSAMRLGSKEAMQVEAVSTGSLGLDIALGIGGLPRGRIIEIYGPE
SSGKTTLALHAIAEAQKGGGTAAFIDAEHALDPVYARKLGVDIDNLIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKNF
LRENPEVCSRLEAAIRGRTDQVAEGLMAGPDADDDI

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=25419 SARO_RS06380 WP_011444933.1 1314279..1315349(+) (recA) [Novosphingobium aromaticivorans DSM 12444]
ATGGCGGCTCAGCTCAAGCTCATCGAGGAAGGTAAGACCAAGGACATGGATCGTCAGAAGGCGCTCGACGCGGCCCTTGC
GCAGATTGACCGCGCGTTCGGCAAGGGATCGGCCATGCGGCTCGGTTCGAAGGAAGCGATGCAGGTGGAAGCCGTTTCTA
CCGGATCGCTGGGGCTGGACATCGCGCTCGGCATCGGCGGCCTGCCGCGCGGCCGCATCATCGAGATCTACGGGCCGGAA
AGCTCGGGCAAGACCACGCTGGCGCTCCACGCCATCGCGGAAGCGCAGAAGGGCGGCGGCACCGCAGCCTTCATCGACGC
AGAACACGCGCTGGACCCGGTCTATGCCCGCAAGCTCGGCGTCGACATCGACAATCTGATCGTCTCGCAGCCCGACACGG
GCGAGCAGGCACTTGAAATCACCGACACGCTGGTGCGTTCGAACGCGATCGACGTGCTGGTGGTGGACTCGGTCGCCGCG
CTCGTTCCCCGCGCCGAAATCGAGGGTGAGATGGGCGATAGCCACGTCGGCCTCCAGGCCCGCCTGATGAGCCAGGCCCT
GCGCAAGCTGACCGGTTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGGTGCGCATGAAGATCGGTGTGA
TGTACGGCAACCCGGAAACGACGACGGGCGGCAACGCGCTCAAGTTCTATGCTTCGGTCCGCCTCGACATCCGCCGCACC
GGGCAGATCAAGGATCGCGACGAGATCGTAGGCAACGCCACGCGCGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGATCGGCGAAATTCTCGATCTCGGCGTGAAGGCCG
GGCTGGTCGAGAAGTCGGGCGCCTGGTTCAGCTATGATTCCATTCGCATCGGGCAGGGGCGTGAGAACGCCAAGAACTTC
CTGCGCGAAAATCCCGAAGTTTGCAGCCGTCTGGAAGCCGCGATCCGCGGCCGCACCGATCAGGTTGCCGAAGGACTGAT
GGCGGGCCCGGACGCGGACGACGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G8V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.529

95.506

0.654
  recA Glaesserella parasuis strain SC1401

71.473

89.607

0.64
  recA Vibrio cholerae strain A1552

70.497

90.449

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.497

90.449

0.638
  recA Acinetobacter baumannii D1279779

70.497

90.449

0.638
  recA Acinetobacter baylyi ADP1

70.497

90.449

0.638
  recA Neisseria gonorrhoeae MS11

69.47

90.169

0.626
  recA Neisseria gonorrhoeae MS11

69.47

90.169

0.626
  recA Neisseria gonorrhoeae strain FA1090

69.47

90.169

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

68.438

89.888

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.223

95.787

0.615
  recA Ralstonia pseudosolanacearum GMI1000

70.779

86.517

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

93.539

0.607
  recA Streptococcus mitis SK321

60.969

98.596

0.601
  recA Helicobacter pylori strain NCTC11637

65.635

90.73

0.596
  recA Streptococcus pneumoniae Rx1

61.516

96.348

0.593
  recA Streptococcus pneumoniae TIGR4

61.516

96.348

0.593
  recA Streptococcus pneumoniae R6

61.516

96.348

0.593
  recA Streptococcus pneumoniae D39

61.516

96.348

0.593
  recA Helicobacter pylori 26695

65.325

90.73

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

65.625

89.888

0.59
  recA Streptococcus pyogenes NZ131

61.29

95.787

0.587
  recA Streptococcus mitis NCTC 12261

62.09

94.101

0.584
  recA Streptococcus mutans UA159

60.411

95.787

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.292

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.701

94.101

0.562

Multiple sequence alignment