Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CS387_RS02210 | Genome accession | NZ_CP024601 |
| Coordinates | 472046..473068 (-) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis strain KCOM 2799 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 474019..510822 | 472046..473068 | flank | 951 |
Gene organization within MGE regions
Location: 472046..510822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS387_RS02210 (CS387_02190) | recA | 472046..473068 (-) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
| CS387_RS02215 (CS387_02195) | bcp | 473089..473544 (-) | 456 | WP_043894074.1 | thioredoxin-dependent thiol peroxidase | - |
| CS387_RS02220 (CS387_02200) | - | 474093..474476 (+) | 384 | WP_232517557.1 | hypothetical protein | - |
| CS387_RS02225 (CS387_02205) | - | 474683..475594 (+) | 912 | WP_021677780.1 | hypothetical protein | - |
| CS387_RS02230 (CS387_02210) | mnmE | 475758..477182 (+) | 1425 | WP_097627085.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| CS387_RS02235 (CS387_02215) | - | 477428..478330 (+) | 903 | WP_097627089.1 | helix-turn-helix domain-containing protein | - |
| CS387_RS02240 (CS387_02220) | - | 478419..479522 (+) | 1104 | WP_036883131.1 | site-specific integrase | - |
| CS387_RS02245 (CS387_02225) | - | 479624..480322 (+) | 699 | WP_097627083.1 | mobilization protein | - |
| CS387_RS02250 (CS387_02230) | - | 480439..480798 (+) | 360 | WP_021662986.1 | helix-turn-helix domain-containing protein | - |
| CS387_RS02255 (CS387_02235) | - | 480808..482184 (+) | 1377 | WP_097627081.1 | DUF3987 domain-containing protein | - |
| CS387_RS02260 (CS387_02240) | - | 482282..483340 (+) | 1059 | WP_099895732.1 | DUF6371 domain-containing protein | - |
| CS387_RS02265 (CS387_02245) | - | 483441..483794 (+) | 354 | WP_077084068.1 | MobC family plasmid mobilization relaxosome protein | - |
| CS387_RS02270 (CS387_02250) | - | 483791..484714 (+) | 924 | WP_097627091.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CS387_RS02275 (CS387_02255) | - | 484711..485409 (+) | 699 | WP_097627093.1 | hypothetical protein | - |
| CS387_RS02280 (CS387_02260) | - | 485453..486190 (+) | 738 | Protein_419 | restriction endonuclease subunit S | - |
| CS387_RS02285 (CS387_02265) | - | 486114..486713 (-) | 600 | WP_232517559.1 | restriction endonuclease subunit S | - |
| CS387_RS02290 (CS387_02270) | - | 486724..488376 (-) | 1653 | WP_099895734.1 | class I SAM-dependent DNA methyltransferase | - |
| CS387_RS02295 (CS387_02275) | - | 488382..491615 (-) | 3234 | WP_099895736.1 | type I restriction endonuclease subunit R | - |
| CS387_RS02300 (CS387_02280) | - | 491684..492622 (-) | 939 | WP_097627656.1 | HipA domain-containing protein | - |
| CS387_RS02305 (CS387_02285) | - | 492612..492947 (-) | 336 | WP_097627658.1 | HipA N-terminal domain-containing protein | - |
| CS387_RS02310 (CS387_02290) | - | 492944..493168 (-) | 225 | WP_097627660.1 | helix-turn-helix transcriptional regulator | - |
| CS387_RS02315 (CS387_02295) | - | 493434..493910 (-) | 477 | WP_097627697.1 | phosphohydrolase | - |
| CS387_RS02320 (CS387_02300) | - | 493914..494234 (-) | 321 | WP_097627695.1 | helix-turn-helix domain-containing protein | - |
| CS387_RS02325 (CS387_02305) | - | 494330..495292 (-) | 963 | WP_097627693.1 | hypothetical protein | - |
| CS387_RS02330 (CS387_02310) | ltrA | 495464..497131 (-) | 1668 | WP_023847784.1 | group II intron reverse transcriptase/maturase | - |
| CS387_RS02340 (CS387_02320) | - | 498426..499034 (-) | 609 | WP_232517560.1 | DUF4393 domain-containing protein | - |
| CS387_RS02345 (CS387_02325) | - | 499244..499729 (-) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| CS387_RS11970 (CS387_02335) | - | 499950..500126 (-) | 177 | WP_077082953.1 | DNA methylase | - |
| CS387_RS02360 (CS387_02340) | - | 500151..501236 (-) | 1086 | WP_099895740.1 | IS5-like element ISPg8 family transposase | - |
| CS387_RS02365 (CS387_02345) | - | 501340..502593 (+) | 1254 | Protein_434 | AAA family ATPase | - |
| CS387_RS02370 (CS387_02350) | - | 502581..502889 (+) | 309 | WP_005874351.1 | helix-turn-helix domain-containing protein | - |
| CS387_RS02375 (CS387_02355) | - | 502980..503687 (+) | 708 | WP_005874356.1 | DUF6088 family protein | - |
| CS387_RS02380 (CS387_02360) | - | 503672..504670 (+) | 999 | WP_054191170.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CS387_RS02385 (CS387_02365) | - | 504775..506256 (-) | 1482 | WP_394357727.1 | helicase-related protein | - |
| CS387_RS02390 (CS387_02370) | - | 506647..507156 (+) | 510 | Protein_439 | site-specific integrase | - |
| CS387_RS02395 (CS387_02375) | - | 507253..508338 (+) | 1086 | WP_097626557.1 | IS5 family transposase | - |
| CS387_RS11975 (CS387_02380) | - | 508363..508491 (+) | 129 | WP_097530673.1 | DNA methylase | - |
| CS387_RS02405 (CS387_02385) | - | 508486..508740 (-) | 255 | Protein_442 | Arm DNA-binding domain-containing protein | - |
| CS387_RS02410 (CS387_02390) | - | 508745..509476 (-) | 732 | Protein_443 | tyrosine-type recombinase/integrase | - |
| CS387_RS11980 (CS387_02395) | - | 509425..509592 (-) | 168 | WP_099895744.1 | DNA methylase | - |
| CS387_RS02420 (CS387_02400) | - | 509617..510702 (-) | 1086 | WP_099895740.1 | IS5-like element ISPg8 family transposase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=254179 CS387_RS02210 WP_004584116.1 472046..473068(-) (recA) [Porphyromonas gingivalis strain KCOM 2799]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=254179 CS387_RS02210 WP_004584116.1 472046..473068(-) (recA) [Porphyromonas gingivalis strain KCOM 2799]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTAGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAACTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTAGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAACTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.