Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CS546_RS00600 | Genome accession | NZ_CP024593 |
| Coordinates | 124913..125935 (-) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis strain KCOM 2804 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 126639..162809 | 124913..125935 | flank | 704 |
Gene organization within MGE regions
Location: 124913..162809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS546_RS00600 (CS546_00600) | recA | 124913..125935 (-) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
| CS546_RS00605 (CS546_00605) | bcp | 125956..126411 (-) | 456 | WP_012457992.1 | thioredoxin-dependent thiol peroxidase | - |
| CS546_RS00610 (CS546_00610) | - | 126584..127114 (+) | 531 | WP_232522073.1 | hypothetical protein | - |
| CS546_RS00615 (CS546_00615) | - | 127288..128199 (+) | 912 | WP_021662981.1 | hypothetical protein | - |
| CS546_RS00620 (CS546_00620) | mnmE | 128363..129787 (+) | 1425 | WP_005874231.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| CS546_RS00625 (CS546_00625) | - | 130065..130979 (+) | 915 | WP_099811512.1 | helix-turn-helix domain-containing protein | - |
| CS546_RS00630 (CS546_00630) | - | 131068..132171 (+) | 1104 | WP_099811514.1 | site-specific integrase | - |
| CS546_RS00635 (CS546_00635) | - | 132273..132971 (+) | 699 | WP_099811516.1 | mobilization protein | - |
| CS546_RS00640 (CS546_00640) | - | 133088..133447 (+) | 360 | WP_021662986.1 | helix-turn-helix domain-containing protein | - |
| CS546_RS00645 (CS546_00645) | - | 133457..134833 (+) | 1377 | WP_099811518.1 | DUF3987 domain-containing protein | - |
| CS546_RS00650 (CS546_00650) | - | 134931..135989 (+) | 1059 | WP_099811520.1 | DUF6371 domain-containing protein | - |
| CS546_RS00655 (CS546_00655) | - | 136090..136443 (+) | 354 | WP_099811522.1 | plasmid mobilization protein | - |
| CS546_RS00660 (CS546_00660) | - | 136440..137366 (+) | 927 | WP_099811524.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CS546_RS00665 (CS546_00665) | - | 137363..138055 (+) | 693 | WP_099811526.1 | hypothetical protein | - |
| CS546_RS00670 (CS546_00670) | - | 138241..142428 (-) | 4188 | WP_099811528.1 | ATP-binding protein | - |
| CS546_RS00675 (CS546_00675) | - | 142566..145013 (-) | 2448 | WP_099811530.1 | type I restriction endonuclease subunit R | - |
| CS546_RS00680 (CS546_00680) | - | 145141..146298 (+) | 1158 | WP_097561394.1 | IS4-like element IS1598 family transposase | - |
| CS546_RS11705 | - | 146399..146755 (-) | 357 | WP_394798153.1 | hypothetical protein | - |
| CS546_RS11710 | - | 146756..147264 (-) | 509 | Protein_128 | type I restriction endonuclease | - |
| CS546_RS00690 (CS546_00690) | - | 147280..148074 (-) | 795 | WP_157761727.1 | restriction endonuclease subunit S | - |
| CS546_RS11715 (CS546_00695) | - | 148215..148400 (-) | 186 | WP_099811534.1 | hypothetical protein | - |
| CS546_RS00700 (CS546_00700) | - | 148420..149976 (-) | 1557 | WP_099811536.1 | N-6 DNA methylase | - |
| CS546_RS00705 (CS546_00705) | - | 149981..150931 (-) | 951 | WP_099811538.1 | HipA domain-containing protein | - |
| CS546_RS00710 (CS546_00710) | - | 150921..151256 (-) | 336 | WP_077084039.1 | HipA N-terminal domain-containing protein | - |
| CS546_RS00715 (CS546_00715) | - | 151253..151477 (-) | 225 | WP_077084038.1 | helix-turn-helix transcriptional regulator | - |
| CS546_RS00720 (CS546_00720) | - | 151621..152880 (-) | 1260 | WP_099811539.1 | type II toxin-antitoxin system HipA family toxin | - |
| CS546_RS00725 (CS546_00725) | - | 152884..153204 (-) | 321 | WP_097561577.1 | helix-turn-helix domain-containing protein | - |
| CS546_RS00730 (CS546_00730) | - | 153599..154381 (-) | 783 | WP_004584112.1 | DUF4393 domain-containing protein | - |
| CS546_RS00735 (CS546_00735) | - | 154418..154903 (-) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| CS546_RS12135 (CS546_00745) | - | 155138..155308 (-) | 171 | WP_099811541.1 | DNA methylase | - |
| CS546_RS00750 (CS546_00750) | - | 155333..156418 (-) | 1086 | WP_099811615.1 | IS5 family transposase | - |
| CS546_RS00755 (CS546_00755) | - | 156522..157775 (+) | 1254 | Protein_141 | bifunctional DNA primase/helicase | - |
| CS546_RS00760 (CS546_00760) | - | 157763..158071 (+) | 309 | WP_005874351.1 | helix-turn-helix domain-containing protein | - |
| CS546_RS00765 (CS546_00765) | - | 158162..158869 (+) | 708 | WP_005874356.1 | DUF6088 family protein | - |
| CS546_RS00770 (CS546_00770) | - | 158854..159852 (+) | 999 | WP_054191170.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CS546_RS00775 (CS546_00775) | - | 159957..161567 (-) | 1611 | WP_232522075.1 | helicase C-terminal domain-containing protein | - |
| CS546_RS00785 (CS546_00785) | - | 161581..162665 (-) | 1085 | Protein_146 | IS5 family transposase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=254131 CS546_RS00600 WP_004584116.1 124913..125935(-) (recA) [Porphyromonas gingivalis strain KCOM 2804]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=254131 CS546_RS00600 WP_004584116.1 124913..125935(-) (recA) [Porphyromonas gingivalis strain KCOM 2804]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAGGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTCGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAGGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTCGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.