Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y75_RS18990 Genome accession   NC_007779
Coordinates   3827856..3828524 (+) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli str. K-12 substr. W3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3822856..3833524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y75_RS18960 (Y75_p3530) yicC 3822876..3823739 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  Y75_RS18965 (Y75_p3531) rph 3823866..3824581 (+) 716 Protein_3623 ribonuclease PH -
  Y75_RS18970 (Y75_p3532) pyrE 3824647..3825288 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  Y75_RS18975 (Y75_p3533) slmA 3825325..3825921 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  Y75_RS18980 (Y75_p3534) dut 3826028..3826486 (-) 459 WP_000976073.1 dUTP diphosphatase -
  Y75_RS18985 (Y75_p3535) coaBC 3826464..3827684 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  Y75_RS18990 (Y75_p3536) radC 3827856..3828524 (+) 669 WP_001350561.1 RadC family protein Machinery gene
  Y75_RS18995 (Y75_p3537) rpmB 3828741..3828977 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  Y75_RS19000 (Y75_p3538) rpmG 3828998..3829165 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  Y75_RS19005 (Y75_p3539) mutM 3829263..3830072 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  Y75_RS19010 (Y75_p3540) coaD 3830111..3830590 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  Y75_RS19015 (Y75_p3541) waaA 3830598..3831875 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  Y75_RS19020 (Y75_p3542) rfaQ 3832281..3833351 (+) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=25317 Y75_RS18990 WP_001350561.1 3827856..3828524(+) (radC) [Escherichia coli str. K-12 substr. W3110]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=25317 Y75_RS18990 WP_001350561.1 3827856..3828524(+) (radC) [Escherichia coli str. K-12 substr. W3110]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment