Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CYA_RS05110 Genome accession   NC_007775
Coordinates   1113594..1114718 (+) Length   374 a.a.
NCBI ID   WP_049749737.1    Uniprot ID   -
Organism   Synechococcus sp. JA-3-3Ab     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1108594..1119718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYA_RS14035 - 1111655..1111786 (+) 132 Protein_1053 hypothetical protein -
  CYA_RS05100 (CYA_1090) tsaE 1111862..1112482 (-) 621 WP_011429963.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CYA_RS05105 (CYA_1091) lgt 1112486..1113340 (-) 855 WP_011429964.1 prolipoprotein diacylglyceryl transferase -
  CYA_RS05110 (CYA_1092) recA 1113594..1114718 (+) 1125 WP_049749737.1 recombinase RecA Machinery gene
  CYA_RS05115 (CYA_1093) - 1114734..1115546 (-) 813 WP_011429966.1 TrmH family RNA methyltransferase -
  CYA_RS05120 (CYA_1094) - 1115580..1116926 (-) 1347 WP_011429967.1 16S rRNA (cytosine(967)-C(5))-methyltransferase -
  CYA_RS14675 - 1117063..1117194 (-) 132 Protein_1059 IS200/IS605 family transposase -
  CYA_RS15720 - 1117544..1117759 (+) 216 WP_369781491.1 hypothetical protein -
  CYA_RS05125 (CYA_1095) - 1118160..1118549 (-) 390 WP_011429968.1 SOS response-associated peptidase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40099.80 Da        Isoelectric Point: 5.2314

>NTDB_id=25317 CYA_RS05110 WP_049749737.1 1113594..1114718(+) (recA) [Synechococcus sp. JA-3-3Ab]
MARKAADVNNGDDLDKLKSEKRKALDQVLGQIERNFGKGAIMRLGDAAQMRVETIPSGAITLDLAMGGGYPKGRIIEVFG
PESSGKTSVALHAIAEVQKRGGTAAFVDAEHALDPAYAAALGVDIQNLLISQPDTGEAALEIVDQLVRSAAVDIVVVDSV
AALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGNVSKTGSIVLFLNQLRSKIGGIGYGLQETTTGGNALKFYASVRLDI
RRVQTLKKGAEEYGIRARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIVDLAEEMGILKRRGSWYSYKEENVAQGRDNL
VVYLKEKPEILAEVEAAVREKLSAGVTVSASRPGGIEEGEQEEVEAPIFADEEF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=25317 CYA_RS05110 WP_049749737.1 1113594..1114718(+) (recA) [Synechococcus sp. JA-3-3Ab]
ATGGCCCGCAAAGCTGCCGACGTGAACAACGGCGACGACTTGGACAAGTTGAAGTCGGAGAAACGCAAAGCTCTGGATCA
GGTGTTGGGCCAGATCGAGCGCAATTTTGGCAAAGGGGCGATCATGCGCCTGGGAGATGCGGCCCAGATGCGGGTGGAGA
CCATACCCAGCGGCGCTATCACCCTCGACTTGGCCATGGGCGGTGGCTACCCCAAGGGGCGAATCATCGAAGTCTTCGGG
CCGGAATCTTCTGGGAAAACCTCGGTTGCTCTGCACGCCATCGCTGAGGTGCAAAAACGAGGGGGAACGGCTGCTTTTGT
GGATGCCGAGCACGCGCTGGATCCCGCCTACGCGGCGGCTTTGGGGGTAGATATCCAGAATCTGCTCATCTCCCAGCCGG
ACACGGGGGAGGCCGCCCTGGAGATTGTCGATCAACTGGTGCGCTCTGCTGCTGTGGACATTGTGGTGGTGGACTCGGTG
GCAGCGTTGGTTCCCCGCGCCGAGATCGAGGGGGATATGGGAGACGCCCATGTGGGGTTACAGGCCCGCCTGATGAGCCA
AGCGCTGCGCAAGATTGCCGGCAACGTCAGCAAAACCGGGTCAATTGTTCTGTTCCTCAACCAGTTGCGCTCCAAAATCG
GCGGCATCGGCTACGGCCTCCAGGAAACCACCACTGGCGGCAATGCCCTCAAGTTCTATGCGTCGGTGCGGCTGGATATT
CGCCGCGTGCAAACTCTGAAGAAAGGTGCTGAAGAATACGGGATCCGGGCGCGGGTCAAGGTGGTGAAAAACAAAGTTGC
TCCCCCATTCCGGCGGGCAGAATTCGACATCATCTTCGGCCAGGGCATCTCCAACATCGGCTGCATTGTCGATCTGGCCG
AGGAGATGGGCATTCTCAAACGACGCGGTTCCTGGTACAGCTACAAAGAGGAAAATGTGGCCCAAGGGAGAGACAATCTG
GTCGTTTACCTGAAAGAAAAGCCGGAGATCCTGGCGGAGGTGGAAGCGGCTGTGCGGGAAAAACTTTCTGCAGGGGTAAC
GGTTTCTGCCAGCCGACCGGGGGGGATAGAGGAGGGAGAGCAGGAAGAGGTTGAGGCCCCCATCTTTGCAGATGAGGAGT
TTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

62.539

86.364

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

61.92

86.364

0.535
  recA Acinetobacter baylyi ADP1

57.637

92.781

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.225

92.513

0.529
  recA Pseudomonas stutzeri DSM 10701

60.245

87.433

0.527
  recA Neisseria gonorrhoeae strain FA1090

60.308

86.898

0.524
  recA Neisseria gonorrhoeae MS11

60.308

86.898

0.524
  recA Neisseria gonorrhoeae MS11

60.308

86.898

0.524
  recA Glaesserella parasuis strain SC1401

54.775

95.187

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.434

88.77

0.519
  recA Acinetobacter baumannii D1279779

59.021

87.433

0.516
  recA Streptococcus pneumoniae Rx1

57.831

88.77

0.513
  recA Streptococcus pneumoniae TIGR4

57.831

88.77

0.513
  recA Streptococcus pneumoniae D39

57.831

88.77

0.513
  recA Streptococcus pneumoniae R6

57.831

88.77

0.513
  recA Streptococcus mitis SK321

57.751

87.968

0.508
  recA Streptococcus mutans UA159

57.751

87.968

0.508
  recA Streptococcus mitis NCTC 12261

57.751

87.968

0.508
  recA Ralstonia pseudosolanacearum GMI1000

59.937

84.759

0.508
  recA Streptococcus pyogenes NZ131

56.928

88.77

0.505
  recA Helicobacter pylori 26695

57.143

87.968

0.503
  recA Helicobacter pylori strain NCTC11637

57.143

87.968

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.881

87.433

0.497
  recA Vibrio cholerae strain A1552

56.881

87.433

0.497
  recA Lactococcus lactis subsp. cremoris KW2

54.896

90.107

0.495
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.268

87.701

0.476

Multiple sequence alignment