Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ADEH_RS20480 Genome accession   NC_007760
Coordinates   4577301..4578377 (+) Length   358 a.a.
NCBI ID   WP_011423010.1    Uniprot ID   Q2IGM0
Organism   Anaeromyxobacter dehalogenans 2CP-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4572301..4583377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADEH_RS20455 (Adeh_3960) thpR 4573598..4574182 (+) 585 WP_011423006.1 RNA 2',3'-cyclic phosphodiesterase -
  ADEH_RS20460 (Adeh_3961) - 4574190..4575365 (-) 1176 WP_011423007.1 cache domain-containing protein -
  ADEH_RS20465 - 4575381..4575584 (-) 204 WP_041453734.1 hypothetical protein -
  ADEH_RS20470 (Adeh_3962) - 4575827..4576420 (+) 594 WP_011423008.1 YqgE/AlgH family protein -
  ADEH_RS20475 (Adeh_3963) - 4576440..4577030 (-) 591 WP_011423009.1 DUF2378 family protein -
  ADEH_RS20480 (Adeh_3964) recA 4577301..4578377 (+) 1077 WP_011423010.1 recombinase RecA Machinery gene
  ADEH_RS20485 (Adeh_3965) - 4578618..4580063 (+) 1446 WP_041453735.1 LETM1 domain-containing protein -
  ADEH_RS20490 (Adeh_3966) - 4580217..4581764 (-) 1548 WP_011423012.1 HEAT repeat domain-containing protein -
  ADEH_RS20495 (Adeh_3967) - 4581795..4582442 (-) 648 WP_011423013.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38519.18 Da        Isoelectric Point: 7.0833

>NTDB_id=25304 ADEH_RS20480 WP_011423010.1 4577301..4578377(+) (recA) [Anaeromyxobacter dehalogenans 2CP-C]
MPVGPEKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRIIEIYGPESSGKTTLAL
HAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSGEQALEIVETLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSV
IGNRTRVKVVKNKVAPPFKEVEFDIMYGHGISREGDVLDLASNEGIVEKSGTWFSFGGERIGQGREQTKAFFREHPEILQ
QVEARLFEKFGIHRGPVAVPSPPAEEPAEERKPRAKAK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=25304 ADEH_RS20480 WP_011423010.1 4577301..4578377(+) (recA) [Anaeromyxobacter dehalogenans 2CP-C]
ATGCCCGTGGGACCGGAGAAGGAGAAGGCGATCGAGCTGGCCGTCGCGTCGATCGAGAAGGCGTTCGGCAAGGGCTCGAT
CATGCGCCTCGGCAACGAGGACGCGCTGGTGAAGGACGTCCAGGCGGTCTCGACCGGCGCGATCTCGCTGGACATCGCGC
TCGGCGTGGGCGGCTTCCCGCGCGGCCGCATCATCGAGATCTACGGGCCGGAGTCCTCCGGCAAGACCACCCTGGCGCTG
CACGCCATCGCCGAGGCGCAGCGGCGCGGCGGCATCGCCGCGTTCGTGGACGCCGAGCACGCGCTCGACGTGGGCTACGC
CCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCATCTCGCAGCCCGACAGCGGCGAGCAGGCGCTCGAGATCGTCGAGA
CCCTGGTCCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCGGCCCTGGTGCCCAAGGCCGAGCTCGAGGGA
GAGATGGGCGACGCGCACATGGGCGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTCACCGGCACCATCTCCAA
GTCCTCGACCATCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGGAACCCGGAGACCACCACCG
GCGGCAACGCGCTCAAGTTCTACGCGTCGCAGCGGCTCGACATCCGCCGCATCGGGGCCATCAAGGACGGCGACTCCGTC
ATCGGCAACCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCCACGGCATCAGCCGTGAGGGCGACGTGCTCGACCTCGCCTCGAACGAGGGCATCGTCGAGAAGAGCGGCACCTGGT
TCAGCTTCGGCGGCGAGCGCATCGGCCAGGGGCGCGAGCAGACCAAGGCGTTCTTCCGCGAGCACCCCGAGATCCTCCAG
CAGGTGGAGGCCCGCCTGTTCGAGAAGTTCGGCATCCACCGCGGCCCGGTGGCCGTCCCTTCCCCGCCGGCGGAGGAGCC
GGCCGAGGAGCGGAAGCCCCGCGCCAAGGCGAAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2IGM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

63.037

97.486

0.615
  recA Ralstonia pseudosolanacearum GMI1000

69.206

87.989

0.609
  recA Acinetobacter baumannii D1279779

62.757

95.251

0.598
  recA Pseudomonas stutzeri DSM 10701

62.209

96.089

0.598
  recA Vibrio cholerae strain A1552

65.217

89.944

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.217

89.944

0.587
  recA Acinetobacter baylyi ADP1

64.506

90.503

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

90.223

0.581
  recA Helicobacter pylori strain NCTC11637

59.942

96.927

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

92.458

0.575
  recA Helicobacter pylori 26695

59.366

96.927

0.575
  recA Streptococcus mitis NCTC 12261

57.865

99.441

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.048

92.737

0.575
  recA Neisseria gonorrhoeae MS11

63.665

89.944

0.573
  recA Neisseria gonorrhoeae MS11

63.665

89.944

0.573
  recA Neisseria gonorrhoeae strain FA1090

63.665

89.944

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

91.62

0.573
  recA Streptococcus pneumoniae R6

60.714

93.855

0.57
  recA Streptococcus pneumoniae Rx1

60.714

93.855

0.57
  recA Streptococcus pneumoniae D39

60.714

93.855

0.57
  recA Streptococcus pneumoniae TIGR4

60.714

93.855

0.57
  recA Streptococcus mitis SK321

58.382

96.648

0.564
  recA Streptococcus mutans UA159

59.76

93.017

0.556
  recA Streptococcus pyogenes NZ131

59.94

92.737

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

92.179

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.958

93.017

0.539

Multiple sequence alignment