Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYN_RS01660 Genome accession   NC_007759
Coordinates   341366..342397 (-) Length   343 a.a.
NCBI ID   WP_011416255.1    Uniprot ID   Q2LPL5
Organism   Syntrophus aciditrophicus SB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 336366..347397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN_RS01645 (SYN_03321) - 337780..338121 (+) 342 WP_011416252.1 hypothetical protein -
  SYN_RS01650 (SYN_02026) alaS 338234..340870 (-) 2637 WP_011416253.1 alanine--tRNA ligase -
  SYN_RS01655 (SYN_02027) - 340851..341369 (-) 519 WP_011416254.1 regulatory protein RecX -
  SYN_RS01660 (SYN_02028) recA 341366..342397 (-) 1032 WP_011416255.1 recombinase RecA Machinery gene
  SYN_RS01665 (SYN_02029) thpR 342615..343202 (-) 588 WP_011416256.1 RNA 2',3'-cyclic phosphodiesterase -
  SYN_RS01670 (SYN_02030) - 343275..344537 (-) 1263 WP_011416257.1 competence/damage-inducible protein A -
  SYN_RS01675 (SYN_02031) - 344597..345037 (-) 441 WP_041584598.1 phosphatidylglycerophosphatase A -
  SYN_RS01680 (SYN_02034) - 345601..345999 (-) 399 WP_041584599.1 DUF4332 domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37007.39 Da        Isoelectric Point: 6.1758

>NTDB_id=25286 SYN_RS01660 WP_011416255.1 341366..342397(-) (recA) [Syntrophus aciditrophicus SB]
MGTDGDRAKAVDLAISQIERQFGKGSIMRLGAKERIEDIAVIPTGALSLDIALGIGGVPRGRIIEIFGPESGGKTTLALH
IIAEAQKRNGLAAFIDAEHALDVSYARKIGVNTDDLLISQPDTGEQALEIAETLVRSGALDILVVDSVAALVPKAEIEGE
MGDAQMGLQARLMSQALRKLTGSISKSNTTVIFINQLRMKIGVFFGNPETTTGGNALKFYASMRLDIRKSGSIKSGQDVI
GMRTKVKVVKNKVAPPFRETEFDILFGEGISKAGDILDLAAESGIVEKSGAWYSYGGERIGQGRDNTRNFLKEHPDILVR
IEEQVRSEHGLKPRLQEQEEPAK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=25286 SYN_RS01660 WP_011416255.1 341366..342397(-) (recA) [Syntrophus aciditrophicus SB]
ATGGGAACAGATGGAGACAGGGCAAAGGCGGTGGATCTGGCAATAAGTCAGATCGAAAGGCAGTTCGGAAAGGGGTCTAT
CATGCGCCTGGGGGCGAAAGAGCGGATCGAGGACATTGCGGTCATTCCGACCGGAGCACTCAGTCTGGATATCGCGCTGG
GCATCGGCGGCGTCCCCCGGGGACGCATCATCGAAATTTTCGGTCCTGAATCCGGGGGAAAGACGACCCTGGCCCTGCAT
ATTATTGCGGAAGCACAGAAGCGGAACGGACTGGCGGCCTTCATCGATGCCGAACACGCCCTGGATGTTTCCTACGCCCG
AAAAATCGGCGTCAACACCGACGATCTGCTGATTTCCCAGCCGGATACCGGGGAGCAGGCCCTGGAGATCGCGGAAACCC
TGGTTCGCAGCGGAGCCCTGGATATCCTCGTTGTGGATTCCGTGGCCGCCCTGGTCCCCAAGGCGGAAATCGAAGGGGAA
ATGGGCGATGCCCAGATGGGGCTGCAGGCCAGACTGATGTCCCAGGCCCTGCGGAAACTCACCGGCAGCATCAGCAAATC
CAACACGACGGTTATCTTCATCAACCAGCTGCGAATGAAGATCGGCGTATTCTTCGGCAACCCGGAAACGACGACCGGCG
GCAACGCCCTGAAATTCTACGCTTCCATGCGCCTCGACATCCGCAAGTCCGGTTCCATCAAATCGGGGCAGGATGTCATC
GGCATGCGGACCAAGGTGAAGGTCGTGAAAAACAAGGTCGCGCCGCCCTTCCGGGAGACGGAATTCGACATCCTCTTCGG
CGAGGGGATTTCCAAGGCCGGGGATATTCTCGATCTGGCCGCGGAAAGCGGGATCGTGGAAAAGAGCGGCGCCTGGTACT
CCTACGGGGGAGAGCGGATCGGCCAGGGCCGGGACAACACCAGGAACTTTTTAAAGGAGCATCCCGATATTCTGGTCCGG
ATCGAGGAACAGGTGCGAAGCGAACACGGTCTGAAGCCCCGGTTGCAGGAACAGGAAGAACCTGCTAAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2LPL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.937

92.128

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

95.044

0.644
  recA Helicobacter pylori 26695

63.314

98.542

0.624
  recA Helicobacter pylori strain NCTC11637

63.018

98.542

0.621
  recA Glaesserella parasuis strain SC1401

64.939

95.627

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.722

98.542

0.618
  recA Pseudomonas stutzeri DSM 10701

64.923

94.752

0.615
  recA Neisseria gonorrhoeae MS11

63.554

96.793

0.615
  recA Neisseria gonorrhoeae strain FA1090

63.554

96.793

0.615
  recA Neisseria gonorrhoeae MS11

63.554

96.793

0.615
  recA Acinetobacter baylyi ADP1

64

94.752

0.606
  recA Vibrio cholerae strain A1552

63.03

96.21

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.03

96.21

0.606
  recA Acinetobacter baumannii D1279779

63.077

94.752

0.598
  recA Streptococcus pneumoniae R6

61.631

96.501

0.595
  recA Streptococcus pneumoniae Rx1

61.631

96.501

0.595
  recA Streptococcus pneumoniae D39

61.631

96.501

0.595
  recA Streptococcus pneumoniae TIGR4

61.631

96.501

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

95.044

0.589
  recA Streptococcus mitis NCTC 12261

61.027

96.501

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.617

93.586

0.586
  recA Streptococcus mitis SK321

60.725

96.501

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

95.044

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.303

96.21

0.58
  recA Streptococcus mutans UA159

59.819

96.501

0.577
  recA Streptococcus pyogenes NZ131

59.394

96.21

0.571

Multiple sequence alignment