Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL2594_RS07655 Genome accession   NC_007722
Coordinates   1601026..1602084 (-) Length   352 a.a.
NCBI ID   WP_011414472.1    Uniprot ID   Q2N9K3
Organism   Erythrobacter litoralis HTCC2594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1596026..1607084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL2594_RS07640 (ELI_07715) - 1597096..1597278 (+) 183 WP_011414469.1 hypothetical protein -
  EL2594_RS07645 (ELI_07720) alaS 1597286..1599949 (-) 2664 WP_011414470.1 alanine--tRNA ligase -
  EL2594_RS07650 (ELI_07725) - 1600021..1600845 (-) 825 WP_011414471.1 class I SAM-dependent methyltransferase -
  EL2594_RS07655 (ELI_07730) recA 1601026..1602084 (-) 1059 WP_011414472.1 recombinase RecA Machinery gene
  EL2594_RS07660 (ELI_07735) - 1602234..1604678 (-) 2445 WP_011414473.1 response regulator -
  EL2594_RS07665 (ELI_07740) - 1604675..1605265 (-) 591 WP_011414474.1 DUF2062 domain-containing protein -
  EL2594_RS07670 (ELI_07745) smpB 1605424..1605906 (-) 483 WP_011414475.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.12 Da        Isoelectric Point: 4.9777

>NTDB_id=25282 EL2594_RS07655 WP_011414472.1 1601026..1602084(-) (recA) [Erythrobacter litoralis HTCC2594]
MSANLKLVEKENNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAMNVEAISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKALGVDIDELIVSQPDTGEQALEITDTLVRSNAVDILVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSIRIGQGRENAKTYLK
ENPEICDKLEAAIRGKTDEVAEEMMTGPDAED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=25282 EL2594_RS07655 WP_011414472.1 1601026..1602084(-) (recA) [Erythrobacter litoralis HTCC2594]
ATGTCCGCCAATCTGAAGCTGGTTGAAAAGGAAAACAACGTGGACCGTCAGAAGGCGCTTGACGCAGCACTCGCCCAGAT
CGACCGCGCGTTCGGCAAGGGCTCGGCGATGAAGCTGGGTTCGAAGGAAGCGATGAATGTCGAAGCGATTTCGACCGGGT
CGCTCGGGCTGGATATCGCGCTTGGCATCGGCGGCCTCCCCAAGGGCCGCGTGATCGAAGTCTATGGCCCGGAAAGCTCG
GGCAAGACAACGCTCGCGCTGCACGCCATCGCCGAAGCCCAGAAGGCCGGCGGGACCGCTGCCTTCGTCGATGCCGAGCA
TGCGCTCGACCCTGTCTATGCCAAGGCACTGGGCGTCGACATCGATGAATTGATCGTCTCGCAGCCCGATACCGGCGAGC
AGGCGCTCGAGATTACCGACACATTGGTGCGTTCCAATGCAGTCGATATCCTCGTCGTCGATTCGGTCGCCGCTCTGGTT
CCGCGTGCGGAGATCGAAGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAGCCAGTCGCTACGCAA
GCTGACCGGCTCGATCAACCGTTCCAAGTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGTGTGATGTACG
GCAACCCCGAGACGACGACGGGCGGAAACGCGCTCAAGTTCTACGCTTCGGTCCGGCTGGACATTCGCCGTACCGGCCAG
ATCAAGGACCGGGACGAAGTGGTCGGCAACTCGACCCGCGTGAAGGTTGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCA
GGTCGAATTCGACATCATGTATGGCGAAGGCATCTCCAAGATCGGCGAAATCCTCGACCTCGGCGTCAAGGCCGGGATCG
TCGAGAAGTCCGGCTCCTGGTTCAGCTACGACAGCATCCGGATCGGGCAGGGGCGCGAGAACGCCAAGACCTATCTCAAG
GAAAATCCCGAGATTTGCGACAAGTTGGAAGCCGCCATTCGCGGTAAAACCGACGAGGTCGCCGAGGAGATGATGACCGG
TCCTGACGCTGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2N9K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.639

96.023

0.659
  recA Glaesserella parasuis strain SC1401

69.394

93.75

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.358

95.17

0.651
  recA Vibrio cholerae strain A1552

68.358

95.17

0.651
  recA Neisseria gonorrhoeae MS11

70.093

91.193

0.639
  recA Neisseria gonorrhoeae MS11

70.093

91.193

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.093

91.193

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.879

93.75

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

70

90.909

0.636
  recA Acinetobacter baylyi ADP1

68.438

90.909

0.622
  recA Acinetobacter baumannii D1279779

68.125

90.909

0.619
  recA Streptococcus pneumoniae D39

61.364

100

0.614
  recA Streptococcus pneumoniae TIGR4

61.364

100

0.614
  recA Streptococcus pneumoniae Rx1

61.364

100

0.614
  recA Streptococcus pneumoniae R6

61.364

100

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.978

91.193

0.611
  recA Latilactobacillus sakei subsp. sakei 23K

62.941

96.591

0.608
  recA Helicobacter pylori strain NCTC11637

63.69

95.455

0.608
  recA Helicobacter pylori 26695

63.393

95.455

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.156

87.5

0.605
  recA Streptococcus mitis NCTC 12261

63.174

94.886

0.599
  recA Streptococcus mitis SK321

62.575

94.886

0.594
  recA Streptococcus pyogenes NZ131

63.19

92.614

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.299

95.17

0.574
  recA Streptococcus mutans UA159

62.346

92.045

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.33

0.568

Multiple sequence alignment