Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   KSH_RS09355 Genome accession   NZ_CP024180
Coordinates   2102351..2103406 (+) Length   351 a.a.
NCBI ID   WP_100285146.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2097351..2108406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS09345 (KSH_10610) - 2099263..2100099 (+) 837 WP_040404146.1 DegV family protein -
  KSH_RS09350 (KSH_10615) - 2100257..2101888 (+) 1632 Protein_1818 acyl-CoA synthetase -
  KSH_RS09355 (KSH_10620) recA 2102351..2103406 (+) 1056 WP_100285146.1 recombinase RecA Machinery gene
  KSH_RS09360 (KSH_10625) - 2103512..2104144 (+) 633 WP_100285147.1 regulatory protein RecX -
  KSH_RS09365 (KSH_10630) - 2104153..2105241 (-) 1089 WP_100285148.1 sulfate ABC transporter substrate-binding protein -
  KSH_RS09370 (KSH_10635) ffh 2105421..2106887 (-) 1467 WP_065253465.1 signal recognition particle protein -
  KSH_RS09375 (KSH_10640) - 2107053..2107850 (+) 798 WP_172460484.1 inner membrane protein YpjD -
  KSH_RS09380 (KSH_10645) acpP 2107934..2108176 (-) 243 WP_007115622.1 acyl carrier protein -

Sequence


Protein


Download         Length: 351 a.a.        Molecular weight: 37713.17 Da        Isoelectric Point: 5.0351

>NTDB_id=252803 KSH_RS09355 WP_100285146.1 2102351..2103406(+) (recA) [Moraxella osloensis strain KSH]
MDDNKAKALTAALSQIEKQFGKNTIMRLGDESAKINVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQAI
AQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNGEQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGENIIGS
ETRVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGKANAIRFLEENPQIAQEIE
AKVRAAKLGNVEPVPEEAHDVEPPEFVEGMQ

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=252803 KSH_RS09355 WP_100285146.1 2102351..2103406(+) (recA) [Moraxella osloensis strain KSH]
ATGGACGACAATAAAGCCAAAGCTTTAACTGCCGCTTTATCACAAATTGAAAAACAATTCGGTAAAAATACCATCATGCG
CCTGGGTGATGAGTCAGCAAAAATCAACGTGGATGTAGTCTCCACAGGCTCATTGGGTTTGGATATTGCACTGGGCATTG
GCGGTTTGCCAAAGGGTCGTATCGTAGAAATTTATGGTCCTGAAAGTTCGGGTAAAACCACTTTAACCTTGCAAGCAATC
GCCCAATGTCAAAAGCAGGGCGGTACCTGTGCTTTTATCGATGCTGAACATGCGCTAGACCCTATTTATGCCAAAAAATT
GGGCGTTGATGTCGACGCTTTACTTGTCACGCAGCCTGACAACGGTGAACAAGCGCTTGAAATCACCGATATGCTAGTGC
GCTCAGGTGCGGTGGATATGATTGTTGTTGACTCGGTCGCTGCCCTTACCCCACGCGCGGAAATTGAAGGCGAGATGGGC
GACAGCCATATGGGTCTGCAAGCGCGCTTGATGAGCCAAGCGTTACGAAAAATCACCGGTAACGCCAAACGCTCTAACTG
TATGGTGGTATTCATTAACCAAATTCGTATGAAAATCGGTGTCATGTTTGGCTCGCCAGAAACCACAACCGGTGGTAACG
CCCTTAAATTCTATGCGTCGGTGCGCTTGGATATTCGTCGTATTGGTGCGGTTAAAGACGGTGAAAACATCATCGGTTCT
GAGACCCGCGTTAAAGTCATCAAAAATAAACTGGCGCCGCCGTTTCGCCAAGCAGAATTTGACATCATGTATGGGACAGG
TACCAATCATCTAGGTGAAGTGGTTGACTTGGGTGTCGATATTGATGCGGTCAAAAAATCGGGCGCTTGGTACAGCTACA
ATGACAGTAAAATTGGTCAAGGTAAAGCCAACGCCATTAGATTCTTGGAAGAAAATCCCCAAATCGCCCAAGAGATTGAA
GCCAAAGTGCGCGCTGCTAAGCTTGGTAATGTCGAACCTGTGCCAGAAGAAGCGCATGACGTTGAACCCCCTGAGTTTGT
CGAAGGTATGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

78.286

99.715

0.781

  recA Acinetobacter baumannii D1279779

77.233

98.86

0.764

  recA Pseudomonas stutzeri DSM 10701

72.622

98.86

0.718

  recA Vibrio cholerae strain A1552

70.141

100

0.709

  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.141

100

0.709

  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661

  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661

  recA Neisseria gonorrhoeae strain FA1090

71.385

92.593

0.661

  recA Glaesserella parasuis strain SC1401

72.05

91.738

0.661

  recA Ralstonia pseudosolanacearum GMI1000

72.492

88.034

0.638

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.769

92.593

0.618

  recA Helicobacter pylori strain NCTC11637

63.235

96.866

0.613

  recA Helicobacter pylori 26695

62.941

96.866

0.61

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

93.732

0.598

  recA Streptococcus pneumoniae R6

57.382

100

0.587

  recA Streptococcus pneumoniae TIGR4

57.382

100

0.587

  recA Streptococcus pneumoniae Rx1

57.382

100

0.587

  recA Streptococcus pneumoniae D39

57.382

100

0.587

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.89

93.447

0.578

  recA Bacillus subtilis subsp. subtilis str. 168

62.654

92.308

0.578

  recA Latilactobacillus sakei subsp. sakei 23K

60.299

95.442

0.576

  recA Streptococcus pyogenes NZ131

60.736

92.877

0.564

  recA Streptococcus mitis NCTC 12261

60.802

92.308

0.561

  recA Streptococcus mitis SK321

60.494

92.308

0.558

  recA Streptococcus mutans UA159

59.816

92.877

0.556

  recA Lactococcus lactis subsp. cremoris KW2

59.877

92.308

0.553


Multiple sequence alignment