Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   YHS_RS09495 Genome accession   NZ_CP024176
Coordinates   2157615..2158670 (+) Length   351 a.a.
NCBI ID   WP_007115617.1    Uniprot ID   A0AA96KZ96
Organism   Moraxella osloensis strain YHS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2152615..2163670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS09485 (YHS_10625) - 2154547..2155377 (+) 831 WP_157797033.1 DegV family protein -
  YHS_RS09490 (YHS_10630) - 2155535..2157166 (+) 1632 Protein_1854 acyl-CoA synthetase -
  YHS_RS09495 (YHS_10635) recA 2157615..2158670 (+) 1056 WP_007115617.1 recombinase RecA Machinery gene
  YHS_RS09500 (YHS_10640) - 2158776..2159408 (+) 633 WP_076776466.1 regulatory protein RecX -
  YHS_RS09505 (YHS_10645) - 2159417..2160505 (-) 1089 WP_076776468.1 sulfate ABC transporter substrate-binding protein -
  YHS_RS09510 (YHS_10650) ffh 2160686..2162158 (-) 1473 WP_100274087.1 signal recognition particle protein -
  YHS_RS09515 (YHS_10655) - 2162324..2163121 (+) 798 WP_198510425.1 inner membrane protein YpjD -
  YHS_RS09520 (YHS_10660) acpP 2163181..2163423 (-) 243 WP_060994515.1 acyl carrier protein -

Sequence


Protein


Download         Length: 351 a.a.        Molecular weight: 37699.14 Da        Isoelectric Point: 5.0351

>NTDB_id=252786 YHS_RS09495 WP_007115617.1 2157615..2158670(+) (recA) [Moraxella osloensis strain YHS]
MDDNKAKALTAALSQIEKQFGKNTIMRLGDESAKINVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQAI
AQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNGEQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGENIVGS
ETRVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGKANAIRFLEENPQIAQEIE
AKVRAAKLGNVEPVPEEAHDVEPPEFVEGMQ

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=252786 YHS_RS09495 WP_007115617.1 2157615..2158670(+) (recA) [Moraxella osloensis strain YHS]
ATGGACGACAATAAAGCCAAAGCTTTAACTGCCGCTTTATCACAAATTGAAAAACAATTTGGTAAAAATACCATCATGCG
CTTGGGTGATGAGTCAGCAAAAATCAACGTGGATGTAGTCTCCACAGGCTCATTGGGTTTGGATATCGCACTGGGCATTG
GTGGTTTGCCAAAGGGTCGTATCGTCGAAATTTATGGTCCTGAAAGTTCGGGTAAAACCACTTTAACCTTGCAAGCAATC
GCCCAATGTCAAAAACAAGGCGGTACCTGTGCTTTTATCGATGCTGAACATGCACTAGACCCTATTTATGCCAAAAAATT
GGGCGTTGATGTCGACGCTTTACTTGTCACGCAGCCTGACAACGGTGAACAAGCGCTTGAAATCACTGATATGCTAGTGC
GCTCAGGTGCGGTGGATATGATTGTTGTTGACTCGGTCGCTGCCCTTACCCCACGCGCAGAGATTGAAGGCGAGATGGGC
GACAGCCACATGGGTCTGCAAGCGCGCTTGATGAGCCAAGCGCTACGTAAAATCACCGGTAACGCCAAACGCTCTAACTG
TATGGTGGTATTCATTAACCAAATTCGTATGAAAATCGGTGTCATGTTTGGCTCGCCAGAAACCACAACCGGTGGTAACG
CCCTTAAATTCTATGCGTCGGTGCGCTTGGATATTCGTCGTATTGGTGCGGTTAAAGACGGTGAAAACATCGTCGGTTCT
GAGACCCGCGTTAAAGTCATCAAAAATAAACTGGCGCCGCCGTTTCGCCAAGCAGAATTTGACATCATGTATGGGACAGG
TACCAATCATTTAGGTGAAGTGGTGGACTTGGGCGTCGATATTGATGCGGTCAAAAAATCGGGCGCTTGGTACAGCTACA
ACGACAGTAAAATTGGTCAAGGTAAAGCCAACGCTATTAGATTTTTGGAAGAAAACCCACAAATCGCCCAAGAGATTGAA
GCCAAAGTGCGCGCTGCTAAGCTTGGTAATGTCGAACCTGTGCCAGAAGAAGCGCATGATGTTGAACCCCCTGAGTTTGT
CGAAGGTATGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

78

99.715

0.778

  recA Acinetobacter baumannii D1279779

77.522

98.86

0.766

  recA Pseudomonas stutzeri DSM 10701

72.911

98.86

0.721

  recA Vibrio cholerae strain A1552

70.423

100

0.712

  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.423

100

0.712

  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661

  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661

  recA Neisseria gonorrhoeae strain FA1090

71.385

92.593

0.661

  recA Glaesserella parasuis strain SC1401

71.739

91.738

0.658

  recA Ralstonia pseudosolanacearum GMI1000

72.816

88.034

0.641

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

92.593

0.615

  recA Helicobacter pylori strain NCTC11637

62.941

96.866

0.61

  recA Helicobacter pylori 26695

62.647

96.866

0.607

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

93.732

0.595

  recA Streptococcus pneumoniae R6

57.66

100

0.59

  recA Streptococcus pneumoniae TIGR4

57.66

100

0.59

  recA Streptococcus pneumoniae Rx1

57.66

100

0.59

  recA Streptococcus pneumoniae D39

57.66

100

0.59

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.195

93.447

0.581

  recA Bacillus subtilis subsp. subtilis str. 168

62.654

92.308

0.578

  recA Latilactobacillus sakei subsp. sakei 23K

60

95.442

0.573

  recA Streptococcus mitis NCTC 12261

61.111

92.308

0.564

  recA Streptococcus pyogenes NZ131

60.429

92.877

0.561

  recA Streptococcus mitis SK321

60.802

92.308

0.561

  recA Streptococcus mutans UA159

59.509

92.877

0.553

  recA Lactococcus lactis subsp. cremoris KW2

59.568

92.308

0.55


Multiple sequence alignment