Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BXP16_RS06765 Genome accession   NZ_CP024022
Coordinates   1382591..1383634 (-) Length   347 a.a.
NCBI ID   WP_000952097.1    Uniprot ID   G2MDS0
Organism   Helicobacter pylori strain 7.13_D3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377591..1388634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXP16_RS06735 (BXP16_06730) - 1377832..1378941 (+) 1110 WP_000022418.1 glycosyltransferase family 8 protein -
  BXP16_RS06740 (BXP16_06735) - 1378946..1379902 (-) 957 WP_000952264.1 PDC sensor domain-containing protein -
  BXP16_RS06745 (BXP16_06740) - 1379923..1380411 (-) 489 WP_001164308.1 shikimate kinase -
  BXP16_RS06750 (BXP16_06745) - 1380416..1381012 (-) 597 WP_013195928.1 AMIN domain-containing protein -
  BXP16_RS06755 (BXP16_06750) - 1381030..1381305 (-) 276 WP_000146222.1 hypothetical protein -
  BXP16_RS06760 (BXP16_06755) eno 1381298..1382578 (-) 1281 WP_000955619.1 phosphopyruvate hydratase -
  BXP16_RS06765 (BXP16_06760) recA 1382591..1383634 (-) 1044 WP_000952097.1 recombinase RecA Machinery gene
  BXP16_RS06770 (BXP16_06765) - 1383733..1384596 (+) 864 WP_000626283.1 menaquinone biosynthesis family protein -
  BXP16_RS06775 (BXP16_06770) - 1384593..1385360 (-) 768 WP_000506255.1 hypothetical protein -
  BXP16_RS06780 (BXP16_06775) - 1385450..1386031 (-) 582 WP_000660400.1 hypothetical protein -
  BXP16_RS06785 (BXP16_06780) - 1386043..1386627 (-) 585 WP_001222068.1 hypothetical protein -
  BXP16_RS06790 (BXP16_06785) - 1386728..1386934 (-) 207 WP_000670506.1 DUF4006 family protein -
  BXP16_RS06795 (BXP16_06790) ccoP 1386945..1387823 (-) 879 WP_000346888.1 cytochrome-c oxidase, cbb3-type subunit III -
  BXP16_RS06800 (BXP16_06795) - 1387825..1388043 (-) 219 WP_002203649.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37654.39 Da        Isoelectric Point: 5.5047

>NTDB_id=251196 BXP16_RS06765 WP_000952097.1 1382591..1383634(-) (recA) [Helicobacter pylori strain 7.13_D3b]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=251196 BXP16_RS06765 WP_000952097.1 1382591..1383634(-) (recA) [Helicobacter pylori strain 7.13_D3b]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCCTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGAAAGACCACTCTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CAAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCTGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACTTTAATCTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTGAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

100

100

1
  recA Helicobacter pylori 26695

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment