Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BS636_RS14155 Genome accession   NZ_CP024011
Coordinates   2911490..2912533 (+) Length   347 a.a.
NCBI ID   WP_099339363.1    Uniprot ID   A0A2D1IT52
Organism   Acinetobacter sp. LoGeW2-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2906490..2917533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS14120 (BS636_14115) rraA 2906497..2907006 (-) 510 WP_099339356.1 ribonuclease E activity regulator RraA -
  BS636_RS14125 (BS636_14120) - 2907017..2907682 (-) 666 WP_099339357.1 NAD-dependent epimerase/dehydratase family protein -
  BS636_RS14130 (BS636_14125) rpsT 2907897..2908166 (+) 270 WP_099339358.1 30S ribosomal protein S20 -
  BS636_RS16580 - 2908307..2908429 (-) 123 WP_265735287.1 hypothetical protein -
  BS636_RS14135 (BS636_14130) - 2908551..2909300 (-) 750 WP_099339359.1 histidine phosphatase family protein -
  BS636_RS14140 (BS636_14135) - 2909361..2910212 (-) 852 WP_099339360.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  BS636_RS14145 (BS636_14140) - 2910225..2910911 (+) 687 WP_099339361.1 HAD-IA family hydrolase -
  BS636_RS14150 (BS636_14145) - 2910904..2911344 (+) 441 WP_099339362.1 RNA-binding S4 domain-containing protein -
  BS636_RS14155 (BS636_14150) recA 2911490..2912533 (+) 1044 WP_099339363.1 recombinase RecA Machinery gene
  BS636_RS14160 (BS636_14155) - 2912610..2913227 (+) 618 WP_099339364.1 regulatory protein RecX -
  BS636_RS14170 (BS636_14165) - 2914179..2914997 (+) 819 WP_099339365.1 YbgF trimerization domain-containing protein -
  BS636_RS14175 (BS636_14170) lpxA 2915057..2915845 (-) 789 WP_099339366.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  BS636_RS14180 (BS636_14175) fabZ 2915842..2916327 (-) 486 WP_171266097.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BS636_RS14185 (BS636_14180) lpxD 2916333..2917403 (-) 1071 WP_099339368.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37768.27 Da        Isoelectric Point: 5.0614

>NTDB_id=251154 BS636_RS14155 WP_099339363.1 2911490..2912533(+) (recA) [Acinetobacter sp. LoGeW2-3]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQDIVNKAGAWYSYQGDKIGQGKNNTIRYLEEHKELAETIEK
LLREQLLTKAVPVEEKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=251154 BS636_RS14155 WP_099339363.1 2911490..2912533(+) (recA) [Acinetobacter sp. LoGeW2-3]
ATGGATGAGAATAAAAACAAGGCGCTCAACGCTGCCTTAAGCCAAATTGAAAAACAGTTTGGTAAAAATACAGTAATGCG
TCTTGGTGACAATACCGTTCAGGCAGTTGAAGCTGTTTCTACAGGTTCTTTAACGCTTGATATCGCACTCGGTATTGGTG
GTTTACCTAAAGGCCGTATCGTAGAAATCTACGGTCCTGAATCATCAGGTAAAACCACAATGACATTACAAGCAATTGCT
GAATGTCAAAAAGCCGGTGGTACTTGTGCATTCATCGATGCCGAGCACGCACTTGACCCTCAATATGCACGTAAGCTCGG
TGTAGATATCGACAACCTGTTGGTATCACAGCCAGACCACGGTGAACAGGCACTTGAAATTGCTGACATGCTGGTACGTT
CAGGTGCGATTGACCTGATCGTTGTCGACTCCGTTGCTGCCCTAACACCTCGCGCTGAGATTGAAGGTGAAATGGGCGAC
TCGCACATGGGTCTGCAAGCACGTTTGATGAGTCAGGCACTGCGTAAAATTACAGGTAACGCAAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAGCCCTGAAACCACGACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTTCGTCTTGATATCCGTCGTATCGGTCAAGTGAAAGAAGGCGACGAAATTGTTGGTTCGGAG
ACTAAAGTGAAAGTCGTGAAAAACAAAATGGCGCCTCCATTTAAAGAAGCGTTATTCCAGATTCTTTACGGTAAAGGTGT
GAACCATCTTGGTGAATTGATTGATCTTGCTGTGCAACAGGATATTGTGAATAAAGCAGGTGCTTGGTATTCATATCAAG
GTGACAAGATTGGCCAAGGTAAAAATAACACGATTCGTTATTTGGAAGAGCATAAAGAGCTTGCTGAAACCATCGAGAAA
CTTTTACGCGAACAGCTGTTAACTAAAGCCGTTCCTGTGGAAGAAAAAGATGAAGAAGAGCCAGCAGATTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1IT52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.143

100

0.899
  recA Acinetobacter baumannii D1279779

89.398

100

0.899
  recA Pseudomonas stutzeri DSM 10701

74.706

97.983

0.732
  recA Vibrio cholerae strain A1552

75.229

94.236

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.229

94.236

0.709
  recA Glaesserella parasuis strain SC1401

67.241

100

0.674
  recA Ralstonia pseudosolanacearum GMI1000

73.312

89.625

0.657
  recA Neisseria gonorrhoeae MS11

64.553

100

0.646
  recA Neisseria gonorrhoeae MS11

64.553

100

0.646
  recA Neisseria gonorrhoeae strain FA1090

64.553

100

0.646
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.983

0.608
  recA Helicobacter pylori strain NCTC11637

64.526

94.236

0.608
  recA Streptococcus pneumoniae R6

61.047

99.135

0.605
  recA Streptococcus pneumoniae D39

61.047

99.135

0.605
  recA Streptococcus pneumoniae TIGR4

61.047

99.135

0.605
  recA Streptococcus pneumoniae Rx1

61.047

99.135

0.605
  recA Helicobacter pylori 26695

64.22

94.236

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

96.254

0.605
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.407

91.354

0.579
  recA Streptococcus mitis SK321

61.656

93.948

0.579
  recA Streptococcus mitis NCTC 12261

61.656

93.948

0.579
  recA Streptococcus mutans UA159

61.28

94.524

0.579
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.795

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

58.559

95.965

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553

Multiple sequence alignment