Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CRN29_RS07045 Genome accession   NZ_CP023966
Coordinates   1439755..1440807 (-) Length   350 a.a.
NCBI ID   WP_098905490.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1434755..1445807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN29_RS07030 (CRN29_07030) - 1436385..1437179 (-) 795 WP_023350373.1 TIGR00282 family metallophosphoesterase -
  CRN29_RS07035 (CRN29_07035) - 1437340..1437555 (+) 216 WP_002437019.1 hypothetical protein -
  CRN29_RS07040 (CRN29_07040) rny 1437963..1439522 (-) 1560 WP_023350374.1 ribonuclease Y -
  CRN29_RS07045 (CRN29_07045) recA 1439755..1440807 (-) 1053 WP_098905490.1 recombinase RecA Machinery gene
  CRN29_RS07050 (CRN29_07050) - 1440976..1442124 (-) 1149 WP_023350376.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CRN29_RS07055 (CRN29_07055) pgsA 1442267..1442848 (-) 582 WP_023350377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CRN29_RS07060 (CRN29_07060) - 1442876..1443268 (-) 393 WP_002436354.1 RodZ family helix-turn-helix domain-containing protein -
  CRN29_RS07065 (CRN29_07065) - 1443287..1444114 (-) 828 WP_002436330.1 YmfK family protein -
  CRN29_RS07070 (CRN29_07070) ymfI 1444273..1444980 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37927.87 Da        Isoelectric Point: 5.0098

>NTDB_id=250968 CRN29_RS07045 WP_098905490.1 1439755..1440807(-) (recA) [Staphylococcus capitis strain FDAARGOS_378]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIIGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=250968 CRN29_RS07045 WP_098905490.1 1439755..1440807(-) (recA) [Staphylococcus capitis strain FDAARGOS_378]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCATAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.143

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

71.646

93.714

0.671
  recA Streptococcus pneumoniae TIGR4

63.736

100

0.663
  recA Streptococcus pneumoniae R6

63.736

100

0.663
  recA Streptococcus pneumoniae D39

63.736

100

0.663
  recA Streptococcus pneumoniae Rx1

63.736

100

0.663
  recA Streptococcus mutans UA159

63.966

100

0.654
  recA Streptococcus pyogenes NZ131

69.301

94

0.651
  recA Streptococcus mitis NCTC 12261

64.205

100

0.646
  recA Acinetobacter baumannii D1279779

63.429

100

0.634
  recA Acinetobacter baylyi ADP1

63.977

99.143

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.244

98.286

0.631
  recA Neisseria gonorrhoeae MS11

64.244

98.286

0.631
  recA Neisseria gonorrhoeae MS11

64.244

98.286

0.631
  recA Streptococcus mitis SK321

66.066

95.143

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.571

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94

0.617
  recA Helicobacter pylori 26695

65.244

93.714

0.611
  recA Helicobacter pylori strain NCTC11637

64.939

93.714

0.609
  recA Vibrio cholerae strain A1552

64.724

93.143

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.143

0.603
  recA Pseudomonas stutzeri DSM 10701

59.531

97.429

0.58
  recA Glaesserella parasuis strain SC1401

58

100

0.58
  recA Ralstonia pseudosolanacearum GMI1000

64.537

89.429

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.571

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.143

0.557

Multiple sequence alignment