Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PMT9312_RS08520 Genome accession   NC_007577
Coordinates   1541645..1542742 (+) Length   365 a.a.
NCBI ID   WP_011377196.1    Uniprot ID   Q318I0
Organism   Prochlorococcus marinus str. MIT 9312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536645..1547742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMT9312_RS08485 (PMT9312_1648) - 1537221..1537523 (-) 303 WP_011377190.1 50S ribosomal protein L23 -
  PMT9312_RS08490 (PMT9312_1649) rplD 1537520..1538152 (-) 633 WP_011377191.1 50S ribosomal protein L4 -
  PMT9312_RS08495 (PMT9312_1650) rplC 1538149..1538802 (-) 654 WP_011377192.1 50S ribosomal protein L3 -
  PMT9312_RS08500 (PMT9312_1651) ndhN 1539084..1539560 (+) 477 WP_011377193.1 NAD(P)H-quinone oxidoreductase subunit N -
  PMT9312_RS08505 (PMT9312_1652) - 1539566..1540573 (+) 1008 WP_011377194.1 LdpA C-terminal domain-containing domain -
  PMT9312_RS08515 (PMT9312_1653) - 1540756..1541538 (+) 783 WP_011377195.1 HAD family hydrolase -
  PMT9312_RS08520 (PMT9312_1654) recA 1541645..1542742 (+) 1098 WP_011377196.1 recombinase RecA Machinery gene
  PMT9312_RS08525 (PMT9312_1655) - 1542745..1542990 (-) 246 WP_011377197.1 DUF2839 domain-containing protein -
  PMT9312_RS08530 (PMT9312_1656) - 1543020..1544468 (-) 1449 WP_011377198.1 DNA helicase -
  PMT9312_RS08535 (PMT9312_1657) - 1544563..1545402 (+) 840 WP_011377199.1 prephenate/arogenate dehydrogenase -
  PMT9312_RS08540 (PMT9312_1658) crtD 1545392..1546897 (-) 1506 WP_011377200.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39453.18 Da        Isoelectric Point: 6.7397

>NTDB_id=25051 PMT9312_RS08520 WP_011377196.1 1541645..1542742(+) (recA) [Prochlorococcus marinus str. MIT 9312]
MSLEEKKKPESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=25051 PMT9312_RS08520 WP_011377196.1 1541645..1542742(+) (recA) [Prochlorococcus marinus str. MIT 9312]
ATGAGCCTTGAAGAAAAGAAAAAACCCGAATCAAAAGAAAAAGACAAGGCTTTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGATCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCGCTCA
CCTTAGATTTAGCATTAGGAGGGGGCTACCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGAAAAACA
ACATTAACGCTTCACGCGATTGCGGAAGTCCAAAAGAATGGAGGAGTAGCTGCATTTGTAGATGCTGAGCATGCACTCGA
TCCAGTTTATGCAGCCTCTTTAGGAGTTGATGTTGAAAATTTGTTAGTTTCACAACCAGATACAGGTGAAATGGCTCTGG
AAATAGTTGACCAACTTATAAGATCGAGTGCAGTAGATCTTGTAGTTGTTGACTCGGTCGCAGCACTAACCCCAAGAGCC
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGCAGCCAAGCAAGGCTAATGAGCCAAGCGATGAGGAAAATAACAGG
AAATATTGGGAAATCTGGATGTACGGTAATATTCCTGAATCAATTACGCCTAAAAATTGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTAAAATTTTACGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGCATAAGAGCAAAAGTAAAAGTAGCAAAAAATAAAGTTGCACCACCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAGACTAATATCATCATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATCAGGAATAAAGTAGAATCTATGGTTAAAGAGAAATTAACAGAAGGAACTGAAGTCAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAATACAATCGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q318I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.358

93.425

0.545
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.402

89.863

0.507

Multiple sequence alignment