Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYNCC9605_RS01915 Genome accession   NC_007516
Coordinates   382369..383493 (+) Length   374 a.a.
NCBI ID   WP_011363394.1    Uniprot ID   Q3AMM5
Organism   Synechococcus sp. CC9605     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 377369..388493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNCC9605_RS01890 (Syncc9605_0377) - 378227..378688 (+) 462 WP_011363390.1 NAD(P)H-quinone oxidoreductase subunit N -
  SYNCC9605_RS01895 (Syncc9605_0378) - 378655..379686 (+) 1032 WP_011363391.1 LdpA C-terminal domain-containing domain -
  SYNCC9605_RS01900 (Syncc9605_0379) - 379709..381349 (+) 1641 WP_011363392.1 AAA family ATPase -
  SYNCC9605_RS01910 (Syncc9605_0380) - 381533..382282 (+) 750 WP_011363393.1 HAD family hydrolase -
  SYNCC9605_RS01915 (Syncc9605_0381) recA 382369..383493 (+) 1125 WP_011363394.1 recombinase RecA Machinery gene
  SYNCC9605_RS01920 (Syncc9605_0382) - 383496..383840 (-) 345 WP_011363395.1 DUF1815 family protein -
  SYNCC9605_RS01925 (Syncc9605_0383) - 383910..384158 (-) 249 WP_011363396.1 DUF2839 domain-containing protein -
  SYNCC9605_RS01930 (Syncc9605_0384) - 384194..385639 (-) 1446 WP_011363397.1 helicase -
  SYNCC9605_RS01935 (Syncc9605_0385) - 385723..386604 (+) 882 WP_041434351.1 prephenate/arogenate dehydrogenase -
  SYNCC9605_RS01940 (Syncc9605_0386) crtD 386588..388090 (-) 1503 WP_011363399.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39590.26 Da        Isoelectric Point: 6.5234

>NTDB_id=24942 SYNCC9605_RS01915 WP_011363394.1 382369..383493(+) (recA) [Synechococcus sp. CC9605]
MPADMKSGASDPRPSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPES
SGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAAL
TPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQ
TLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTISWM
EENPDATATIETLVRQKLTEGSEVKANSMRPLAAAAKTAAADKSAPAKASEAAA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=24942 SYNCC9605_RS01915 WP_011363394.1 382369..383493(+) (recA) [Synechococcus sp. CC9605]
ATGCCTGCAGATATGAAATCCGGCGCTTCCGATCCCCGTCCCTCCGGAGAGAGGGACAAGGCGCTGAATCTGGTTTTGGG
TCAGATCGAACGCAACTTCGGCAAGGGATCGATCATGCGGCTGGGCGATGCCTCCCGCATGCGGGTGGAGACGATTTCCA
CCGGTGCGCTGACCCTTGACCTCGCGTTGGGTGGTGGTTATCCGAAGGGTCGCGTGGTGGAGATCTACGGCCCAGAAAGT
TCCGGTAAAACCACGCTCACTCTGCACGCGATTGCTGAAGTGCAAAAGCGTGGTGGTGTGGCGGCCTTTGTGGATGCGGA
GCATGCCCTGGATCCCGTGTATGCCGCTTCTCTGGGCGTTGATGTCGAGAACCTGCTGGTCTCCCAGCCCGACACCGGTG
AGATGGCGCTGGAAATTGTTGACCAGTTGGTGCGATCCGCGGCGGTTGACCTCGTCGTCGTCGACTCGGTGGCGGCTCTC
ACCCCTCGTGCTGAGATCGAAGGTGAGATGGGAGACCTGGCGGTTGGTGCTCAAGCGCGTCTGATGAGTCAGGCGATGCG
GAAGATCACAGGCAACATAGGCAAGTCGGGTTGCACCGTCATCTTCCTCAACCAGTTGCGTCTCAAGATTGGTGTGACCT
ACGGCAACCCAGAGACCACCACTGGCGGCAACGCGCTCAAGTTCTATGCCTCGGTTCGCCTCGACATCCGTCGAATTCAG
ACGCTCAAGAAGGGAACCGAAGAGTTCGGTATCAGGGCCAAGGTGAAAGTGGCGAAGAACAAGGTGGCGCCGCCCTTCCG
CATCGCTGAATTCGACATTCTCTTCGGCCGCGGCATCAGCACCCTGGGCTGTCTGCTTGATCTGGCTGAAGAAACGGGCG
TTGTTGTCCGCAAGGGCGCCTGGTACAGCTACGAGGGAGACAACATCGGTCAGGGTCGCGACAACACCATCTCCTGGATG
GAGGAGAACCCGGACGCAACGGCCACCATCGAAACGTTGGTGCGTCAGAAGTTGACGGAGGGTTCTGAGGTGAAGGCGAA
TTCGATGCGCCCCCTTGCCGCTGCTGCGAAGACGGCTGCTGCCGATAAGTCGGCTCCGGCCAAGGCCTCAGAGGCGGCGG
CCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3AMM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.149

86.096

0.57
  recA Acinetobacter baumannii D1279779

65.217

86.096

0.561
  recA Neisseria gonorrhoeae MS11

60.29

92.246

0.556
  recA Neisseria gonorrhoeae strain FA1090

60.29

92.246

0.556
  recA Neisseria gonorrhoeae MS11

60.29

92.246

0.556
  recA Pseudomonas stutzeri DSM 10701

64.596

86.096

0.556
  recA Ralstonia pseudosolanacearum GMI1000

65.916

83.155

0.548
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

86.096

0.537
  recA Vibrio cholerae strain A1552

62.422

86.096

0.537
  recA Glaesserella parasuis strain SC1401

61.92

86.364

0.535
  recA Helicobacter pylori 26695

58.876

90.374

0.532
  recA Helicobacter pylori strain NCTC11637

58.876

90.374

0.532
  recA Streptococcus mitis NCTC 12261

57.225

92.513

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

88.77

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

85.829

0.524
  recA Streptococcus pneumoniae D39

58.333

89.84

0.524
  recA Streptococcus pneumoniae Rx1

58.333

89.84

0.524
  recA Streptococcus pneumoniae R6

58.333

89.84

0.524
  recA Streptococcus pneumoniae TIGR4

58.333

89.84

0.524
  recA Streptococcus mitis SK321

58.209

89.572

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

85.829

0.519
  recA Lactococcus lactis subsp. cremoris KW2

57.313

89.572

0.513
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.233

91.979

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

85.561

0.508
  recA Streptococcus mutans UA159

58.154

86.898

0.505
  recA Streptococcus pyogenes NZ131

56.269

87.433

0.492

Multiple sequence alignment