Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CP523_RS00600 Genome accession   NZ_CP023671
Coordinates   144297..145343 (-) Length   348 a.a.
NCBI ID   WP_066676351.1    Uniprot ID   A0A9N7JJJ3
Organism   Clostridium septicum strain DSM 7534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139297..150343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP523_RS00575 (CP523_00575) purB 139668..141098 (-) 1431 WP_066676343.1 adenylosuccinate lyase -
  CP523_RS00580 (CP523_00580) - 141238..141456 (+) 219 WP_120140413.1 DUF378 domain-containing protein -
  CP523_RS00585 (CP523_00585) - 141536..141796 (-) 261 WP_066676347.1 HPr family phosphocarrier protein -
  CP523_RS00590 (CP523_00590) - 141972..142232 (-) 261 WP_016206312.1 stage V sporulation protein S -
  CP523_RS00595 (CP523_00595) rny 142435..143976 (-) 1542 WP_066676349.1 ribonuclease Y -
  CP523_RS00600 (CP523_00600) recA 144297..145343 (-) 1047 WP_066676351.1 recombinase RecA Machinery gene
  CP523_RS00605 (CP523_00605) pgsA 145505..146095 (-) 591 WP_066676356.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CP523_RS00610 (CP523_00610) rimO 146079..147416 (-) 1338 WP_066676358.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CP523_RS00615 (CP523_00615) - 147505..149907 (-) 2403 WP_227909501.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37358.73 Da        Isoelectric Point: 6.1715

>NTDB_id=249181 CP523_RS00600 WP_066676351.1 144297..145343(-) (recA) [Clostridium septicum strain DSM 7534]
MGNIDTDKLKAIENAMSQIEKQFGKGSVMRLGADSSLNVDAISTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
IAAESQKAGGAVAFIDAEHALDPSYARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIDSIKQGEGIV
GNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGIIQKSGAWFSYGDVRLGQGRENAKLYLKENEDVALD
IENQIRSKHDLPLAVKPSVKKEEKVEGK

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=249181 CP523_RS00600 WP_066676351.1 144297..145343(-) (recA) [Clostridium septicum strain DSM 7534]
ATGGGTAATATAGATACAGATAAATTAAAAGCCATAGAAAATGCTATGAGCCAAATAGAAAAACAATTCGGAAAAGGATC
AGTAATGAGACTTGGTGCAGATAGTTCTTTAAATGTTGATGCTATCTCAACAGGTTGTCTTGATTTAGATATTGCATTAG
GAATTGGTGGAGTTCCAAAGGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTTGCATTACAC
ATAGCTGCGGAATCACAAAAAGCAGGAGGGGCAGTTGCATTTATTGATGCAGAACATGCCTTAGATCCAAGTTATGCTAG
AAATTTAGGTGTTGATACAGAAAGTTTAATAGTTTCACAACCAGATACAGGGGAACAGGCTCTTGAAATTGCAGAGGCTT
TAGTTCGTTCAGGAGCAATTGATGTAATAGTAATTGATTCAGTTGCAGCATTAGTGCCAAGAGCCGAAATAGAAGGTGAA
ATGGGTGATTCTCATGTTGGACTTCAAGCGAGACTTATGTCACAAGCTTTAAGAAAATTAACAGGTACAATTCAAAAAAC
AGGATGTGTAGCTATTTTTATAAATCAATTAAGAGAAAAGGTAGGGGTTATGTTTGGAAATCCAGAAACTACTACGGGTG
GAAGAGCTTTAAAATTCTATGCTTCAGTTAGATTAGATGTTAGAAGAATTGATTCTATTAAACAAGGTGAAGGAATTGTT
GGTAATAGAACAAGAGTTAAGGTAATGAAGAATAAAGTTGCACCGCCATTTAAACAAGCAGAGTTTGATATTATGTACAA
TGAAGGAATTTCAAGAACAGGAAATATAGTAGATGTTGGTGTTAAAGAAGGGATAATACAAAAAAGTGGAGCATGGTTTT
CATATGGAGATGTAAGACTTGGGCAAGGTAGAGAAAATGCTAAATTATATCTAAAAGAAAATGAGGATGTTGCTTTAGAT
ATAGAAAATCAAATTAGATCTAAGCATGATTTACCACTAGCAGTAAAACCTTCTGTAAAAAAAGAAGAAAAAGTTGAAGG
AAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

93.678

0.638
  recA Helicobacter pylori 26695

65

97.701

0.635
  recA Helicobacter pylori strain NCTC11637

65

97.701

0.635
  recA Latilactobacillus sakei subsp. sakei 23K

64.286

96.552

0.621
  recA Ralstonia pseudosolanacearum GMI1000

64.848

94.828

0.615
  recA Acinetobacter baumannii D1279779

65.538

93.391

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.231

93.391

0.609
  recA Streptococcus pneumoniae R6

64.724

93.678

0.606
  recA Streptococcus pneumoniae TIGR4

64.724

93.678

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.724

93.678

0.606
  recA Streptococcus pneumoniae Rx1

64.724

93.678

0.606
  recA Streptococcus pneumoniae D39

64.724

93.678

0.606
  recA Acinetobacter baylyi ADP1

64.923

93.391

0.606
  recA Neisseria gonorrhoeae MS11

62.611

96.839

0.606
  recA Neisseria gonorrhoeae MS11

62.611

96.839

0.606
  recA Neisseria gonorrhoeae strain FA1090

62.611

96.839

0.606
  recA Glaesserella parasuis strain SC1401

63.444

95.115

0.603
  recA Pseudomonas stutzeri DSM 10701

64.615

93.391

0.603
  recA Streptococcus mitis SK321

64.11

93.678

0.601
  recA Streptococcus pyogenes NZ131

63.804

93.678

0.598
  recA Streptococcus mitis NCTC 12261

63.804

93.678

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.54

0.595
  recA Streptococcus mutans UA159

62.31

94.54

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

92.816

0.589
  recA Vibrio cholerae strain A1552

63.467

92.816

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.75

91.954

0.586

Multiple sequence alignment