Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPC19_RS08330 Genome accession   NZ_CP023664
Coordinates   1707820..1708848 (-) Length   342 a.a.
NCBI ID   WP_015005669.1    Uniprot ID   S5T8T8
Organism   Cycloclasticus sp. PY97N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702820..1713848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPC19_RS08310 (CPC19_08310) csrA 1703145..1703330 (-) 186 WP_015005673.1 carbon storage regulator CsrA -
  CPC19_RS08315 (CPC19_08315) - 1703443..1704663 (-) 1221 WP_016389525.1 aspartate kinase -
  CPC19_RS08320 (CPC19_08320) alaS 1704729..1707344 (-) 2616 WP_035850419.1 alanine--tRNA ligase -
  CPC19_RS08325 (CPC19_08325) - 1707362..1707763 (-) 402 WP_016389527.1 regulatory protein RecX -
  CPC19_RS08330 (CPC19_08330) recA 1707820..1708848 (-) 1029 WP_015005669.1 recombinase RecA Machinery gene
  CPC19_RS08335 (CPC19_08335) - 1708963..1709463 (-) 501 WP_016389530.1 CinA family protein -
  CPC19_RS08340 (CPC19_08340) mutS 1709528..1712098 (+) 2571 WP_016389531.1 DNA mismatch repair protein MutS -
  CPC19_RS08345 (CPC19_08345) - 1712099..1712800 (-) 702 WP_015005666.1 DsbC family protein -
  CPC19_RS08350 (CPC19_08350) xerD 1712879..1713769 (-) 891 WP_016389533.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36754.11 Da        Isoelectric Point: 5.3365

>NTDB_id=248990 CPC19_RS08330 WP_015005669.1 1707820..1708848(-) (recA) [Cycloclasticus sp. PY97N]
MDENKKKALSAALLQIEKQFGKGSVMRMGDGSTIPDIGTYSTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLETI
AQCQKAGGTAAFVDAEHALDPIYADKIGVNMDELLVSQPDTGEQALEIVDMLVRSGAVDMVVVDSVAALTPKAEIEGDMG
DHHVGLQARLMSQALRKLTGNIKRSNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGN
DTRVKVVKNKVAPPFKQALFEILYGEGISREGELVDLGVSLDLVEKAGSWYSYGGAKIGQGKDNAKSFFKENPDKSAELE
ANIRDALLPKKEQKEKLIDEGE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=248990 CPC19_RS08330 WP_015005669.1 1707820..1708848(-) (recA) [Cycloclasticus sp. PY97N]
ATGGATGAAAATAAGAAAAAGGCGCTGAGTGCGGCATTACTTCAAATCGAGAAACAATTCGGTAAAGGGTCAGTCATGCG
AATGGGCGATGGTTCAACCATTCCTGATATTGGAACCTATTCAACTGGGTCAATTGCATTGGATGTTGCCTTAGGTGTTG
GTGGCTTGCCACGTGGGCGTATTGTTGAAATTTACGGTCCTGAATCCTCTGGTAAAACAACGTTAACTTTAGAAACCATT
GCTCAATGTCAAAAAGCAGGTGGTACAGCGGCCTTTGTTGATGCAGAGCATGCTCTAGATCCTATTTATGCCGATAAAAT
TGGTGTGAATATGGATGAATTGCTCGTTTCGCAACCTGATACGGGTGAACAGGCCTTAGAAATTGTAGATATGTTAGTAC
GTTCTGGCGCTGTTGATATGGTTGTTGTTGACTCAGTAGCGGCTTTAACACCAAAAGCTGAAATCGAAGGGGATATGGGA
GATCACCATGTTGGCCTGCAAGCCCGTTTAATGTCTCAAGCGCTTAGAAAGTTAACAGGTAATATCAAACGCTCAAATAC
CTTGGTAGTATTTATTAACCAAATTCGAATGAAAATTGGCGTAATGTTTGGCAACCCAGAGACCACAACAGGCGGTAACG
CATTGAAGTTTTATTCATCAGTTCGTTTAGATATTCGTCGTATCGGTGCGATTAAGAAAGGTGATGAAATATTAGGTAAT
GATACACGTGTAAAGGTTGTAAAAAATAAGGTAGCGCCACCATTTAAACAGGCATTATTTGAAATTTTGTATGGTGAAGG
GATTTCACGTGAGGGCGAACTGGTTGACTTAGGTGTGAGCTTAGACCTTGTTGAAAAAGCAGGCTCTTGGTACAGCTATG
GCGGTGCTAAAATTGGCCAAGGTAAGGACAATGCCAAAAGTTTCTTTAAGGAAAACCCTGATAAATCAGCCGAACTAGAG
GCAAACATTAGGGATGCTTTGTTACCTAAAAAAGAGCAGAAAGAAAAATTAATTGATGAAGGTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5T8T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.545

96.491

0.719
  recA Acinetobacter baylyi ADP1

71.637

100

0.716
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae strain FA1090

74.691

94.737

0.708
  recA Acinetobacter baumannii D1279779

73.476

95.906

0.705
  recA Vibrio cholerae strain A1552

72.256

95.906

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.256

95.906

0.693
  recA Glaesserella parasuis strain SC1401

71.385

95.029

0.678
  recA Ralstonia pseudosolanacearum GMI1000

72.436

91.228

0.661
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

94.152

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

97.661

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.244

95.906

0.626
  recA Streptococcus mutans UA159

59.714

100

0.611
  recA Latilactobacillus sakei subsp. sakei 23K

63.889

94.737

0.605
  recA Helicobacter pylori strain NCTC11637

62.5

95.906

0.599
  recA Helicobacter pylori 26695

62.195

95.906

0.596
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

95.614

0.585
  recA Streptococcus mitis SK321

61.42

94.737

0.582
  recA Streptococcus pneumoniae D39

61.42

94.737

0.582
  recA Streptococcus pneumoniae R6

61.42

94.737

0.582
  recA Streptococcus pneumoniae TIGR4

61.42

94.737

0.582
  recA Streptococcus pneumoniae Rx1

61.42

94.737

0.582
  recA Streptococcus mitis NCTC 12261

61.111

94.737

0.579
  recA Streptococcus pyogenes NZ131

60.736

95.322

0.579
  recA Lactococcus lactis subsp. cremoris KW2

57.975

95.322

0.553

Multiple sequence alignment