Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPF11_RS07130 Genome accession   NZ_CP023657
Coordinates   1508319..1509344 (-) Length   341 a.a.
NCBI ID   WP_269320058.1    Uniprot ID   -
Organism   Acetobacter pomorum strain BDGP5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1503319..1514344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF11_RS07110 (CPF11_07110) mdoH 1503619..1505751 (-) 2133 WP_170315319.1 glucans biosynthesis glucosyltransferase MdoH -
  CPF11_RS07115 (CPF11_07115) - 1505754..1507298 (-) 1545 WP_006116637.1 glucan biosynthesis protein -
  CPF11_RS07120 (CPF11_07120) - 1507365..1507730 (-) 366 WP_006116636.1 winged helix-turn-helix domain-containing protein -
  CPF11_RS07125 (CPF11_07125) - 1507800..1508312 (+) 513 WP_006116635.1 GNAT family N-acetyltransferase -
  CPF11_RS07130 (CPF11_07130) recA 1508319..1509344 (-) 1026 WP_269320058.1 recombinase RecA Machinery gene
  CPF11_RS07135 (CPF11_07135) - 1509606..1511060 (-) 1455 WP_006116633.1 gamma-glutamyltransferase -
  CPF11_RS07140 (CPF11_07140) - 1511108..1511986 (+) 879 WP_006116632.1 DsbA family protein -
  CPF11_RS07145 (CPF11_07145) hemA 1512038..1513345 (-) 1308 WP_006116631.1 5-aminolevulinate synthase -
  CPF11_RS07150 (CPF11_07150) - 1513406..1513882 (-) 477 WP_035352952.1 hypothetical protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36677.02 Da        Isoelectric Point: 6.7070

>NTDB_id=248940 CPF11_RS07130 WP_269320058.1 1508319..1509344(-) (recA) [Acetobacter pomorum strain BDGP5]
MDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADVIPTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLALHAIAEA
QKRGGTCAFIDAEHALDPGYAKKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSYDSQRIGQGRENAKQFLRDHPEMAADIERRV
REHAGVVAEAMMVAPEHHEGD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=248940 CPF11_RS07130 WP_269320058.1 1508319..1509344(-) (recA) [Acetobacter pomorum strain BDGP5]
ATGGATAAGGCAAAGGCTCTGGAAGGCGCGCTGGGACAGATTGAACGTGCTTTTGGCAAAGGTTCTGTCATGCGCTTGGG
GCAGCGTCCCAAGGTAGAGGCAGATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGC
CCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTGCATGCCATTGCAGAAGCA
CAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCATGCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGTGGA
TGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCG
CTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCAT
GTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGATGAT
TTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAATCCGGAAACAACCACGGGTGGTAATGCCCTGAAGT
TCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCTATCAAGGACAAGGATGAGGTGACAGGTAATCAGACGCGC
GTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATCAGTAA
GGTTGGTGAGCTGATTGATCTTGGCGTAAAAGCCGGAGTTGTTGAAAAATCTGGCTCATGGTTTTCATACGATAGCCAGC
GCATTGGGCAGGGGCGTGAAAATGCCAAGCAGTTCTTGCGTGATCACCCAGAAATGGCCGCGGATATTGAACGCCGCGTG
CGTGAACACGCAGGCGTTGTTGCCGAGGCTATGATGGTGGCACCAGAACACCATGAAGGTGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.512

96.188

0.669
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.405

95.601

0.654
  recA Pseudomonas stutzeri DSM 10701

66.168

97.947

0.648
  recA Glaesserella parasuis strain SC1401

68.339

93.548

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.497

99.12

0.639
  recA Vibrio cholerae strain A1552

64.497

99.12

0.639
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

95.308

0.633
  recA Acinetobacter baylyi ADP1

67.081

94.428

0.633
  recA Acinetobacter baumannii D1279779

66.46

94.428

0.628
  recA Helicobacter pylori 26695

63.127

99.413

0.628
  recA Helicobacter pylori strain NCTC11637

62.832

99.413

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

100

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

95.894

0.613
  recA Streptococcus pyogenes NZ131

58.79

100

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mutans UA159

60.542

97.361

0.589
  recA Streptococcus mitis SK321

60.303

96.774

0.584
  recA Streptococcus mitis NCTC 12261

60

96.774

0.581
  recA Streptococcus pneumoniae TIGR4

59.697

96.774

0.578
  recA Streptococcus pneumoniae R6

59.697

96.774

0.578
  recA Streptococcus pneumoniae Rx1

59.697

96.774

0.578
  recA Streptococcus pneumoniae D39

59.697

96.774

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

93.842

0.566
  recA Lactococcus lactis subsp. cremoris KW2

57.53

97.361

0.56

Multiple sequence alignment