Detailed information NTG0248841

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: CPF12_RS00010
• Genome accession: NZ_CP023643
• Coordinates: 2050..3102 (-)
• Length: 350 a.a.
• NCBI ID: WP_069119597.1
• Uniprot ID: A0A1D2LR48
• Organism: Brochothrix thermosphacta strain BII
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1..8102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPF12_RS00005 (CPF12_00005)	rny	172..1734 (-)	1563	WP_029091997.1	ribonuclease Y	-
CPF12_RS00010 (CPF12_00010)	recA	2050..3102 (-)	1053	WP_069119597.1	recombinase RecA	Machinery gene
CPF12_RS00015 (CPF12_00015)	-	3237..4493 (-)	1257	WP_069125422.1	competence/damage-inducible protein A	-
CPF12_RS00020 (CPF12_00020)	pgsA	4667..5248 (-)	582	WP_029092000.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
CPF12_RS00025 (CPF12_00025)	-	5347..6219 (-)	873	WP_069125423.1	helix-turn-helix domain-containing protein	-
CPF12_RS00030 (CPF12_00030)	yfmH	6865..8094 (-)	1230	WP_069125425.1	EF-P 5-aminopentanol modification-associated protein YfmH	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37828.94 Da
• Isoelectric Point: 4.8647

>NTDB_id=248841 CPF12_RS00010 WP_069119597.1 2050..3102(-) (recA) [Brochothrix thermosphacta strain BII]
MDNRQAALEQALKQIEKQFGKGSIMKLGEKTDTNIKTIPSGSLALDVALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQEQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIALFINQIREKVGVMFGNPEITPGGRALKFYASVRLEVRRAEQLKQGTDIIGNKT
RIKVVKNKVAPPFRIAEVDIVYGEGISREGELVDMAAEEDIIIKSGSWYSYEGERIGQGRENAKQYLREHTDTRLEISGK
VRNAYGIGDDLPESAEVVEEAAVDTENVEK

Nucleotide

• Length: 1053 bp

>NTDB_id=248841 CPF12_RS00010 WP_069119597.1 2050..3102(-) (recA) [Brochothrix thermosphacta strain BII]
TTGGATAATCGTCAAGCAGCCTTAGAACAGGCATTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGAAATT
AGGTGAAAAAACTGATACCAATATAAAAACTATTCCAAGTGGCTCGTTGGCACTTGATGTGGCATTAGGTGTTGGTGGTT
ATCCTCGTGGACGTGTTGTTGAAGTATACGGTCCAGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCAGAA
GTTCAAGAACAAGGCGGAACAGCGGCGTTTATCGATGCAGAGCATGCACTTGATCCAGCTTATGCTAAAAAATTAGGCGT
TAATATTGATGAATTACTACTTTCTCAACCTGATACAGGTGAACAAGCACTTGAAATATGTGAAGCGTTAGTACGTTCAG
GAGCCGTTGATATCGTTGTTGTCGATTCAGTAGCTGCTTTGGTACCAAAAGCTGAAATTGAAGGCGAAATGGGAGACTCA
CACGTTGGTCTTCAAGCGCGTTTAATGTCACAAGCTTTACGTAAATTATCAGGTTCAATCAACAAATCGAAAACAATTGC
ACTGTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAATTACACCAGGTGGTCGTGCATTGA
AATTTTATGCGTCAGTTCGTTTAGAAGTACGTCGTGCTGAACAACTAAAACAAGGTACTGATATTATCGGTAACAAAACA
CGAATTAAAGTTGTTAAAAATAAAGTAGCGCCACCTTTCCGTATTGCAGAAGTTGATATTGTATACGGAGAAGGAATTTC
ACGTGAAGGTGAATTGGTTGATATGGCAGCTGAAGAAGATATCATTATCAAAAGTGGTTCATGGTATTCTTATGAAGGCG
AACGAATTGGCCAAGGTCGTGAAAATGCAAAACAATATTTACGTGAACATACTGACACTCGTTTAGAAATTTCTGGAAAA
GTTCGTAATGCTTATGGTATTGGCGATGACTTACCAGAATCTGCTGAAGTAGTCGAAGAAGCGGCTGTTGATACGGAAAA
TGTTGAAAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A1D2LR48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Bacillus subtilis subsp. subtilis str. 168	83.03	94.286	0.783
recA	Latilactobacillus sakei subsp. sakei 23K	78.932	96.286	0.76
recA	Streptococcus pneumoniae D39	67.241	99.429	0.669
recA	Streptococcus pneumoniae R6	67.241	99.429	0.669
recA	Streptococcus pneumoniae TIGR4	67.241	99.429	0.669
recA	Streptococcus pneumoniae Rx1	67.241	99.429	0.669
recA	Streptococcus mitis SK321	66.193	100	0.666
recA	Streptococcus mitis NCTC 12261	66.193	100	0.666
recA	Streptococcus pyogenes NZ131	69.605	94	0.654
recA	Streptococcus mutans UA159	68.485	94.286	0.646
recA	Lactococcus lactis subsp. cremoris KW2	68.278	94.571	0.646
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.92	99.429	0.606
recA	Vibrio cholerae strain A1552	60.92	99.429	0.606
recA	Neisseria gonorrhoeae MS11	64.832	93.429	0.606
recA	Neisseria gonorrhoeae MS11	64.832	93.429	0.606
recA	Neisseria gonorrhoeae strain FA1090	64.832	93.429	0.606
recA	Ralstonia pseudosolanacearum GMI1000	65.815	89.429	0.589
recA	Glaesserella parasuis strain SC1401	63.665	92	0.586
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.08	93.429	0.58
recA	Acinetobacter baylyi ADP1	63.24	91.714	0.58
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.774	93.429	0.577
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.774	93.429	0.577
recA	Helicobacter pylori 26695	58.944	97.429	0.574
recA	Helicobacter pylori strain NCTC11637	58.944	97.429	0.574
recA	Pseudomonas stutzeri DSM 10701	62.305	91.714	0.571
recA	Acinetobacter baumannii D1279779	61.994	91.714	0.569