Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CO704_RS03845 Genome accession   NZ_CP023525
Coordinates   792735..793799 (+) Length   354 a.a.
NCBI ID   WP_061274698.1    Uniprot ID   A0A291DU76
Organism   Cedecea neteri strain FDAARGOS_392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 787735..798799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO704_RS03820 (CO704_03820) - 788605..789153 (-) 549 WP_008458272.1 PTS glucitol/sorbitol transporter subunit IIC -
  CO704_RS03825 (CO704_03825) - 789555..790250 (+) 696 WP_061274706.1 ABC transporter ATP-binding protein -
  CO704_RS03830 (CO704_03830) - 790247..791131 (+) 885 WP_061274704.1 metal ABC transporter permease -
  CO704_RS03835 (CO704_03835) - 791128..792006 (+) 879 WP_061274702.1 metal ABC transporter substrate-binding protein -
  CO704_RS03840 (CO704_03840) pncC 792140..792649 (+) 510 WP_061274700.1 nicotinamide-nucleotide amidase -
  CO704_RS03845 (CO704_03845) recA 792735..793799 (+) 1065 WP_061274698.1 recombinase RecA Machinery gene
  CO704_RS03850 (CO704_03850) - 794026..794541 (+) 516 WP_061274696.1 regulatory protein RecX -
  CO704_RS03855 (CO704_03855) alaS 794681..797308 (+) 2628 WP_061274694.1 alanine--tRNA ligase -
  CO704_RS03860 (CO704_03860) csrA 797554..797739 (+) 186 WP_008458257.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38244.64 Da        Isoelectric Point: 4.8819

>NTDB_id=248109 CO704_RS03845 WP_061274698.1 792735..793799(+) (recA) [Cedecea neteri strain FDAARGOS_392]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANASNFLKENKPMAEEI
EKKLREMLLNNQDSTPDFTVDDHNEDAVETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=248109 CO704_RS03845 WP_061274698.1 792735..793799(+) (recA) [Cedecea neteri strain FDAARGOS_392]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTGGGCCAGATTGAAAAACAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCCATGGACGTGGAAACGATCTCTACCGGTTCACTTTCTCTGGACATCGCGCTGGGCG
CAGGCGGCCTGCCAATGGGTCGTATCGTAGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACCCTGCAGGTT
ATTGCTGCCGCGCAGCGTAGCGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGATCCGGTATATGCTAAAAA
ACTGGGCGTTGATATTGACAACCTGCTGTGTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CACGTTCCGGTGCGGTTGACGTCATCATCGTTGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCGGAAACCACGACCGGCGGTA
ACGCACTGAAATTCTACGCATCTGTCCGTCTCGACATTCGTCGTATCGGTGCAGTGAAGGATGGCGAAAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTAGTGAAAAACAAAATTGCTGCGCCATTTAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTACGGTGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAACGGCGAAAAAATCGGTCAGGGAAAGGCAAACGCCAGCAACTTCCTGAAAGAGAACAAGCCGATGGCGGAAGAAATT
GAGAAGAAACTGCGCGAAATGCTGCTGAATAACCAGGACAGCACGCCAGACTTCACGGTAGATGACCACAACGAAGACGC
GGTCGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291DU76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Pseudomonas stutzeri DSM 10701

73.591

95.198

0.701
  recA Acinetobacter baylyi ADP1

69.628

98.588

0.686
  recA Acinetobacter baumannii D1279779

74.312

92.373

0.686
  recA Glaesserella parasuis strain SC1401

69.388

96.893

0.672
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.098

92.09

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.507

99.718

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.525

0.568
  recA Streptococcus pneumoniae TIGR4

61.92

91.243

0.565
  recA Streptococcus pneumoniae Rx1

61.92

91.243

0.565
  recA Streptococcus pneumoniae D39

61.92

91.243

0.565
  recA Streptococcus pneumoniae R6

61.92

91.243

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.068

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus mitis NCTC 12261

61.61

91.243

0.562
  recA Streptococcus pyogenes NZ131

60.923

91.808

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.678

0.545

Multiple sequence alignment