Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CO701_RS03955 Genome accession   NZ_CP023504
Coordinates   803353..804417 (+) Length   354 a.a.
NCBI ID   WP_096755987.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain FDAARGOS_364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 798353..809417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO701_RS03925 (CO701_03925) srlD 798523..799302 (-) 780 WP_096755981.1 sorbitol-6-phosphate dehydrogenase -
  CO701_RS03930 (CO701_03930) srlB 799320..799682 (-) 363 WP_096755982.1 PTS glucitol/sorbitol transporter subunit IIA -
  CO701_RS03935 (CO701_03935) - 799696..800667 (-) 972 WP_096755983.1 PTS glucitol/sorbitol transporter subunit IIB -
  CO701_RS03940 (CO701_03940) srlA 800664..801227 (-) 564 WP_096755984.1 PTS glucitol/sorbitol transporter subunit IIC -
  CO701_RS03945 (CO701_03945) mltB 801490..802569 (+) 1080 WP_096755985.1 lytic murein transglycosylase B -
  CO701_RS03950 (CO701_03950) pncC 802763..803260 (+) 498 WP_096755986.1 nicotinamide-nucleotide amidase -
  CO701_RS03955 (CO701_03955) recA 803353..804417 (+) 1065 WP_096755987.1 recombinase RecA Machinery gene
  CO701_RS03960 (CO701_03960) recX 804486..804986 (+) 501 WP_096755988.1 recombination regulator RecX -
  CO701_RS03965 (CO701_03965) alaS 805115..807742 (+) 2628 WP_096755989.1 alanine--tRNA ligase -
  CO701_RS03970 (CO701_03970) csrA 807981..808166 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38204.59 Da        Isoelectric Point: 4.8894

>NTDB_id=247799 CO701_RS03955 WP_096755987.1 803353..804417(+) (recA) [Citrobacter werkmanii strain FDAARGOS_364]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVIG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPTTAKEI
EKKVRELLLNNQDSKPDFSVDDSSEGVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=247799 CO701_RS03955 WP_096755987.1 803353..804417(+) (recA) [Citrobacter werkmanii strain FDAARGOS_364]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGTG
CAGGCGGTTTGCCGATGGGGCGTATCGTCGAAATCTACGGGCCAGAATCCTCCGGTAAAACAACCCTGACGCTGCAGGTG
ATTGCTGCCGCACAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCAGAACACGCGCTTGACCCTGTTTATGCCCGTAA
GCTTGGTGTTGATATCGACAACCTGCTGTGTTCTCAGCCAGATACCGGTGAACAAGCGCTGGAAATCTGTGACGCACTGG
CGCGTTCCGGTGCCGTAGATGTTCTCGTTGTCGACTCCGTTGCCGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCGGGTAACCTGAAACAGTCCAA
TACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGTGTCATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTAATCGGC
AGTGAAACCCGCGTTAAGGTCGTGAAAAACAAAATTGCTGCGCCGTTTAAACAGGCAGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTCGACCTGGGCGTGAAAGAGAAGCTCATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAAAAAATTGGTCAGGGTAAAGCGAACGCAACCAACTGGCTGAAAGAAAACCCGACTACCGCAAAAGAAATT
GAGAAAAAAGTCCGCGAGTTACTGCTCAATAACCAGGATTCAAAACCGGACTTCTCCGTTGATGACAGCAGTGAAGGCGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

93.503

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.503

0.785
  recA Pseudomonas stutzeri DSM 10701

72.434

96.328

0.698
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Acinetobacter baumannii D1279779

74.312

92.373

0.686
  recA Glaesserella parasuis strain SC1401

70.088

96.328

0.675
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Latilactobacillus sakei subsp. sakei 23K

58.873

100

0.59
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

63.467

91.243

0.579
  recA Streptococcus pyogenes NZ131

62.769

91.808

0.576
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment