Detailed information NTG0024710

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: AVA_RS24985
• Genome accession: NC_007413
• Coordinates: 6193346..6194422 (-)
• Length: 358 a.a.
• NCBI ID: WP_011321581.1
• Uniprot ID: -
• Organism: Trichormus variabilis ATCC 29413
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6188346..6199422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVA_RS29955	-	6189169..6189330 (-)	162	WP_084789106.1	metallothionein	-
AVA_RS24970 (Ava_4922)	-	6189450..6189878 (-)	429	WP_224311567.1	hypothetical protein	-
AVA_RS24975 (Ava_4923)	-	6190355..6191929 (+)	1575	WP_011321579.1	serine/threonine-protein kinase	-
AVA_RS24980 (Ava_4924)	-	6192272..6192976 (+)	705	WP_011321580.1	FHA domain-containing protein	-
AVA_RS24985 (Ava_4925)	recA	6193346..6194422 (-)	1077	WP_011321581.1	recombinase RecA	Machinery gene
AVA_RS24990 (Ava_4926)	-	6194807..6195892 (+)	1086	WP_011321582.1	S66 peptidase family protein	-
AVA_RS24995 (Ava_4927)	-	6195988..6196869 (-)	882	WP_011321583.1	UTP--glucose-1-phosphate uridylyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 38446.74 Da
• Isoelectric Point: 4.8913

>NTDB_id=24710 AVA_RS24985 WP_011321581.1 6193346..6194422(-) (recA) [Trichormus variabilis ATCC 29413]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QIKQQVREKLDKGAVVSANSVAKANEEDEEDVDLDEEE

Nucleotide

• Length: 1077 bp

>NTDB_id=24710 AVA_RS24985 WP_011321581.1 6193346..6194422(-) (recA) [Trichormus variabilis ATCC 29413]
ATGGCTATCAATACCGATACTTCAGGCAAGCAAAAAGCGCTAACAATGGTACTCAACCAGATTGAGCGCAGCTTCGGTAA
AGGAGCAATCATGCGCCTGGGCGATGCTACCCGGATGCGGGTAGAAACGATTTCCACAGGAGCGCTCACCTTGGATTTAG
CATTGGGTGGCGGTTTGCCCAAGGGGCGGGTGATTGAGATTTATGGCCCGGAAAGTTCCGGTAAAACAACAGTAGCACTC
CACGCGATCGCCGAAGTACAAAAAGAAGGCGGAATTGCTGCTTTTGTGGATGCTGAACACGCCCTTGACCCCACCTACGC
CTCAGCCTTAGGTGTAGATATTCAAAACTTGCTGGTCTCCCAACCAGACACAGGTGAATCCGCGTTGGAAATTGTTGATC
AGCTGGTACGCTCCGCCGCCGTTGATATTGTAGTTATTGACTCAGTAGCAGCGTTGGTTCCCCGTGCAGAAATCGAAGGC
GATATGGGTGATGCCCATGTTGGTTTACAAGCGAGATTAATGAGCCAAGCTCTACGTAAAATTACTGGCAATATTGGTAA
ATCTGGTTGTACAGTAATTTTCATTAACCAGTTGCGGCAAAAAATTGGTGTTACCTACGGTAGCCCGGAAACAACCACTG
GTGGTAACGCCTTAAAGTTCTATGCTTCAGTGCGTTTAGATATTCGTCGGATTCAAACCTTGAAAAAAGGTACTGATGAA
TTTGGTAACCGAGTTAAAGTTAAAGTTGCGAAAAATAAAGTTGCACCGCCTTTTAGAATTGCGGAATTTGACATTATTTT
TGGTAAAGGTGTTTCCACTCTAGGTTGTTTAGTAGATTTAGCTGAAGAAACTGGTATCTTACTCCGTAAGGGAGCATGGT
ATAGTTACAATGGCGATAATATTTCTCAAGGTCGAGATAACGCTATCAAGTATCTGGAAGAAAAACCAGAATTTGCTGAA
CAGATTAAACAACAAGTGCGTGAAAAATTGGACAAGGGCGCTGTTGTTTCTGCAAACTCGGTAGCCAAAGCTAACGAAGA
AGATGAAGAAGATGTTGACTTAGACGAGGAAGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (12-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baylyi ADP1	64.655	97.207	0.628
recA	Acinetobacter baumannii D1279779	64.162	96.648	0.62
recA	Pseudomonas stutzeri DSM 10701	63.873	96.648	0.617
recA	Ralstonia pseudosolanacearum GMI1000	64.759	92.737	0.601
recA	Glaesserella parasuis strain SC1401	59.322	98.883	0.587
recA	Bacillus subtilis subsp. subtilis str. 168	62.952	92.737	0.584
recA	Helicobacter pylori strain NCTC11637	61.747	92.737	0.573
recA	Helicobacter pylori 26695	61.747	92.737	0.573
recA	Neisseria gonorrhoeae MS11	64.062	89.385	0.573
recA	Neisseria gonorrhoeae MS11	64.062	89.385	0.573
recA	Neisseria gonorrhoeae strain FA1090	64.062	89.385	0.573
recA	Vibrio cholerae strain A1552	62.733	89.944	0.564
recA	Vibrio cholerae O1 biovar El Tor strain E7946	62.733	89.944	0.564
recA	Streptococcus pneumoniae D39	56.941	98.603	0.561
recA	Streptococcus pneumoniae R6	56.941	98.603	0.561
recA	Streptococcus pneumoniae TIGR4	56.941	98.603	0.561
recA	Streptococcus pneumoniae Rx1	56.941	98.603	0.561
recA	Streptococcus mitis NCTC 12261	56.215	98.883	0.556
recA	Streptococcus pyogenes NZ131	56.695	98.045	0.556
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.639	92.737	0.553
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.366	91.62	0.553
recA	Streptococcus mutans UA159	60.494	90.503	0.547
recA	Latilactobacillus sakei subsp. sakei 23K	61.442	89.106	0.547
recA	Streptococcus mitis SK321	60.062	90.223	0.542
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	57.704	92.458	0.534
recA	Lactococcus lactis subsp. cremoris KW2	59.133	90.223	0.534