Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CEQ83_RS08705 Genome accession   NZ_CP023317
Coordinates   1736198..1737229 (+) Length   343 a.a.
NCBI ID   WP_154991469.1    Uniprot ID   -
Organism   Priestia megaterium strain A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731198..1742229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ83_RS08685 (CEQ83_08715) - 1732252..1733358 (+) 1107 WP_033578641.1 ThiF family adenylyltransferase -
  CEQ83_RS08690 (CEQ83_08720) - 1733379..1734614 (+) 1236 WP_372452327.1 MFS transporter -
  CEQ83_RS08695 (CEQ83_08725) - 1734882..1735316 (-) 435 WP_028413797.1 DUF2269 family protein -
  CEQ83_RS08700 (CEQ83_08730) - 1735335..1735685 (-) 351 WP_033579502.1 ASCH domain-containing protein -
  CEQ83_RS08705 (CEQ83_08735) recA 1736198..1737229 (+) 1032 WP_154991469.1 recombinase RecA Machinery gene
  CEQ83_RS08710 (CEQ83_08745) - 1737579..1738052 (-) 474 WP_028413794.1 hypothetical protein -
  CEQ83_RS08715 (CEQ83_08750) - 1738256..1738708 (-) 453 WP_047751219.1 VOC family protein -
  CEQ83_RS08720 (CEQ83_08755) - 1738993..1739496 (+) 504 WP_155017186.1 DinB family protein -
  CEQ83_RS27780 (CEQ83_08760) - 1740116..1740325 (-) 210 WP_154991773.1 VanZ family protein -
  CEQ83_RS08730 - 1740642..1740791 (+) 150 WP_155017187.1 hypothetical protein -
  CEQ83_RS08735 (CEQ83_08765) - 1741125..1742060 (-) 936 WP_081213958.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37347.34 Da        Isoelectric Point: 4.9930

>NTDB_id=245967 CEQ83_RS08705 WP_154991469.1 1736198..1737229(+) (recA) [Priestia megaterium strain A]
MNDKQAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISREGEILDIGSEVDIVQKSGSWFSYNGERLGQGRENAKVFLKENPEIREEIRKN
IIDFKYGNTDNDNDIDSDSENES

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=245967 CEQ83_RS08705 WP_154991469.1 1736198..1737229(+) (recA) [Priestia megaterium strain A]
ATGAATGATAAACAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAGAT
GGGGGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGTTCATTAGCTTTAGATATCGCTCTTGGGATTAATGGTT
ATCCAAAAGGAAGAATCATGGAAGTGTACGGACCCGAAAGCTCAGGTAAAACAACAGTTTCCTTACATGCGATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCAGTTTACGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAGCAGGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCTCAAAAAGAAATTGAGGGAGAAATGGGAGATTCT
CACGTAGGTCTACAAGCTCGTTTGATGTCTCAAGCCCTTCGTAAACTATCTGGAGCAATTAATAAGTCTAAAACCATTGC
TATCTTCATCAATCAAATCAGGGAGAAAGTAGGCGTTATGTTTGGAAATCCGGAAACAACGCCAGGTGGAAGAGCACTAA
AATTCTATTCTTCCGTTCGTCTTGAGGTTCGCCGCGCTGAACAACTTAAACTGGGAAATGACATAGTTGGTAACAAAACA
AGAATCAAAGTAGTCAAAAATAAGATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAGAGAAGGAGAAATCTTAGATATTGGTTCTGAAGTAGATATTGTTCAAAAGTCTGGATCTTGGTTTTCATATAATGGAG
AACGTTTAGGACAGGGAAGAGAAAACGCTAAGGTTTTCTTAAAAGAAAACCCTGAAATCAGAGAAGAAATTAGAAAAAAC
ATTATTGATTTTAAATATGGTAATACTGACAACGATAATGATATTGATAGCGATAGCGAAAACGAAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.477

96.501

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

72.34

95.918

0.694
  recA Streptococcus pneumoniae Rx1

66.279

100

0.665
  recA Streptococcus pneumoniae D39

66.279

100

0.665
  recA Streptococcus pneumoniae R6

66.279

100

0.665
  recA Streptococcus pneumoniae TIGR4

66.279

100

0.665
  recA Streptococcus mutans UA159

65.507

100

0.659
  recA Streptococcus pyogenes NZ131

68.21

94.461

0.644
  recA Streptococcus mitis NCTC 12261

68.421

94.169

0.644
  recA Streptococcus mitis SK321

68.111

94.169

0.641
  recA Neisseria gonorrhoeae MS11

66.355

93.586

0.621
  recA Neisseria gonorrhoeae MS11

66.355

93.586

0.621
  recA Neisseria gonorrhoeae strain FA1090

66.355

93.586

0.621
  recA Lactococcus lactis subsp. cremoris KW2

65.635

94.169

0.618
  recA Glaesserella parasuis strain SC1401

60.756

100

0.609
  recA Acinetobacter baumannii D1279779

65.204

93.003

0.606
  recA Vibrio cholerae strain A1552

64.89

93.003

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.89

93.003

0.603
  recA Acinetobacter baylyi ADP1

65.19

92.128

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

63.323

93.003

0.589
  recA Helicobacter pylori strain NCTC11637

63.125

93.294

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.798

89.504

0.589
  recA Helicobacter pylori 26695

62.813

93.294

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

95.044

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.696

93.878

0.551

Multiple sequence alignment