Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PMN2A_RS08920 Genome accession   NC_007335
Coordinates   1620047..1621180 (+) Length   377 a.a.
NCBI ID   WP_011295477.1    Uniprot ID   Q46IQ5
Organism   Prochlorococcus marinus str. NATL2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615047..1626180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMN2A_RS08885 (PMN2A_1127) - 1615422..1615733 (-) 312 WP_011295471.1 50S ribosomal protein L23 -
  PMN2A_RS08890 (PMN2A_1128) rplD 1615726..1616361 (-) 636 WP_011295472.1 50S ribosomal protein L4 -
  PMN2A_RS08895 (PMN2A_1129) rplC 1616361..1617017 (-) 657 WP_011295473.1 50S ribosomal protein L3 -
  PMN2A_RS08900 (PMN2A_1130) - 1617388..1617852 (+) 465 WP_011295474.1 NAD(P)H-quinone oxidoreductase subunit N -
  PMN2A_RS08905 (PMN2A_1131) - 1617865..1618887 (+) 1023 WP_011295475.1 LdpA C-terminal domain-containing domain -
  PMN2A_RS08915 (PMN2A_1132) - 1619155..1619934 (+) 780 WP_011295476.1 HAD family hydrolase -
  PMN2A_RS08920 (PMN2A_1133) recA 1620047..1621180 (+) 1134 WP_011295477.1 recombinase RecA Machinery gene
  PMN2A_RS08925 (PMN2A_1134) - 1621200..1621439 (-) 240 WP_011295478.1 DUF2839 domain-containing protein -
  PMN2A_RS08930 (PMN2A_1135) - 1621477..1622925 (-) 1449 WP_011295479.1 helicase -
  PMN2A_RS08935 (PMN2A_1136) - 1622999..1623874 (+) 876 WP_011295480.1 prephenate/arogenate dehydrogenase -
  PMN2A_RS08940 (PMN2A_1137) crtD 1623867..1625384 (-) 1518 WP_011295481.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40420.09 Da        Isoelectric Point: 7.2479

>NTDB_id=24581 PMN2A_RS08920 WP_011295477.1 1620047..1621180(+) (recA) [Prochlorococcus marinus str. NATL2A]
MSNEGKPLQLTESKKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLASAARQASSRPNLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=24581 PMN2A_RS08920 WP_011295477.1 1620047..1621180(+) (recA) [Prochlorococcus marinus str. NATL2A]
ATGTCAAACGAAGGTAAGCCACTCCAATTAACTGAATCTAAGAAAATAGACGCAAAATCTGGAGAGAAAGAAAAAGCATT
GAGCTTAGTTGTTGGGCAAATAGAACGCAATTTCGGAAAGGGTTCGATCATGCGTCTTGGCGACGCATCAAAGATGCGGG
TAGAAACAATATCTACGGGCGCTTTAACTCTTGATTTAGCTCTTGGTGGAGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGAAAAACAACGCTGACATTACATGCAATAGCAGAGATTCAACGTAACGGCGGAGTTGCTGC
TTTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCGCTTGGTGTTGATGTAGAAAATCTTCTCGTATCTC
AACCGGATACAGGTGAGATGGCATTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTAGTTGTTGAT
TCAGTCGCTGCACTGACGCCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGTGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGAAAGTCTGGTTGCACAGTAATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGGAATCCAGAAACAACAACTGGTGGAAACGCTCTTAAGTTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATCCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTTGCAAAAAACAAAGT
TGCGCCTCCATTTCGAATAGCCGAATTTGATATTCTTTTTGGGAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTAG
CAGATGAGACTAATGTCGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGGAGAGACAAC
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAGTTAGTTAAAGAAAAATTAACTGAGGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTAGCGTCAGCGGCTCGACAAGCTTCTTCACGACCAAACCTAAGCCAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q46IQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.09

88.859

0.552
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Streptococcus pneumoniae Rx1

56.78

93.899

0.533
  recA Streptococcus pneumoniae D39

56.78

93.899

0.533
  recA Streptococcus pneumoniae R6

56.78

93.899

0.533
  recA Streptococcus pneumoniae TIGR4

56.78

93.899

0.533
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Streptococcus mitis NCTC 12261

55.524

93.634

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Glaesserella parasuis strain SC1401

59.443

85.676

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mitis SK321

57.704

87.798

0.507
  recA Streptococcus mutans UA159

55.162

89.92

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.193

89.39

0.493
  recA Streptococcus pyogenes NZ131

53.959

90.451

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475

Multiple sequence alignment