Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKY39_RS32515 Genome accession   NZ_CP023284
Coordinates   7025968..7027077 (-) Length   369 a.a.
NCBI ID   WP_062482792.1    Uniprot ID   A0A554RH39
Organism   Variovorax boronicumulans strain J1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7020968..7032077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKY39_RS32485 (CKY39_32485) - 7021082..7022581 (-) 1500 WP_095747312.1 succinate CoA transferase -
  CKY39_RS32490 (CKY39_32490) - 7022650..7023600 (-) 951 WP_095747313.1 bestrophin family protein -
  CKY39_RS32495 (CKY39_32495) - 7023733..7024455 (-) 723 WP_095747314.1 hypothetical protein -
  CKY39_RS32500 (CKY39_32500) yiaA 7024570..7025010 (+) 441 WP_095747315.1 inner membrane protein YiaA -
  CKY39_RS32505 (CKY39_32505) - 7025023..7025421 (-) 399 WP_240531249.1 SRPBCC family protein -
  CKY39_RS32510 (CKY39_32510) recX 7025435..7025908 (-) 474 WP_095747317.1 recombination regulator RecX -
  CKY39_RS32515 (CKY39_32515) recA 7025968..7027077 (-) 1110 WP_062482792.1 recombinase RecA Machinery gene
  CKY39_RS32520 (CKY39_32520) - 7027224..7027709 (+) 486 WP_062482795.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKY39_RS32525 (CKY39_32525) - 7027772..7028446 (+) 675 WP_056575150.1 response regulator transcription factor -
  CKY39_RS32530 (CKY39_32530) - 7028473..7029069 (-) 597 WP_095747318.1 hypothetical protein -
  CKY39_RS32535 (CKY39_32535) - 7029054..7029437 (-) 384 WP_095747319.1 hypothetical protein -
  CKY39_RS32540 (CKY39_32540) - 7029580..7031022 (+) 1443 WP_062480377.1 sensor histidine kinase -
  CKY39_RS32545 (CKY39_32545) - 7031019..7031744 (+) 726 WP_095747320.1 HEAT repeat domain-containing protein -
  CKY39_RS32550 (CKY39_32550) - 7031750..7031950 (-) 201 WP_095747321.1 sporulation protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39258.03 Da        Isoelectric Point: 5.2193

>NTDB_id=245736 CKY39_RS32515 WP_062482792.1 7025968..7027077(-) (recA) [Variovorax boronicumulans strain J1]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE
SSGKTTLTLQVIASMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPDLSREIENKVRESLGIPLLAADAGSEPEKAEKPAKASKADKAAE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=245736 CKY39_RS32515 WP_062482792.1 7025968..7027077(-) (recA) [Variovorax boronicumulans strain J1]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGGCGCTGGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCCCGTGGCCGCGTCGTTGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTGATCGCCTCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCACGCCCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAACAAGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTGGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCAGCCCGCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGACCTGTCGCGCGAAATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCGCTGCTCGCAGCCGA
TGCCGGCAGCGAACCCGAGAAGGCCGAGAAGCCCGCCAAGGCATCGAAGGCCGACAAGGCGGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A554RH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

92.412

0.751
  recA Neisseria gonorrhoeae strain FA1090

68.986

93.496

0.645
  recA Neisseria gonorrhoeae MS11

68.986

93.496

0.645
  recA Neisseria gonorrhoeae MS11

68.986

93.496

0.645
  recA Pseudomonas stutzeri DSM 10701

72.086

88.347

0.637
  recA Acinetobacter baylyi ADP1

72.086

88.347

0.637
  recA Glaesserella parasuis strain SC1401

71.914

87.805

0.631
  recA Acinetobacter baumannii D1279779

70.859

88.347

0.626
  recA Vibrio cholerae strain A1552

69.605

89.16

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

89.16

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.217

93.496

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

89.702

0.599
  recA Helicobacter pylori 26695

64.939

88.889

0.577
  recA Helicobacter pylori strain NCTC11637

64.939

88.889

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

88.618

0.575
  recA Streptococcus mutans UA159

59.718

96.206

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

89.431

0.566
  recA Streptococcus mitis SK321

59.249

93.767

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.934

89.702

0.556
  recA Streptococcus pyogenes NZ131

62.006

89.16

0.553
  recA Streptococcus pneumoniae Rx1

61.027

89.702

0.547
  recA Streptococcus pneumoniae D39

61.027

89.702

0.547
  recA Streptococcus pneumoniae R6

61.027

89.702

0.547
  recA Streptococcus pneumoniae TIGR4

61.027

89.702

0.547
  recA Streptococcus mitis NCTC 12261

60.725

89.702

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.992

0.534

Multiple sequence alignment