Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLI64_RS16550 Genome accession   NZ_CP023278
Coordinates   4002516..4003592 (-) Length   358 a.a.
NCBI ID   WP_103138233.1    Uniprot ID   A0A2I8A8Z5
Organism   Nostoc sp. CENA543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3997516..4008592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI64_RS16530 (CLI64_16415) hemL 3997688..3998986 (+) 1299 WP_103138229.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CLI64_RS16535 (CLI64_16420) - 3999056..3999217 (-) 162 WP_103138230.1 metallothionein -
  CLI64_RS16540 (CLI64_16425) - 3999681..4001300 (+) 1620 WP_103138231.1 serine/threonine-protein kinase -
  CLI64_RS16545 (CLI64_16430) - 4001653..4002390 (+) 738 WP_103138232.1 FHA domain-containing protein -
  CLI64_RS16550 (CLI64_16435) recA 4002516..4003592 (-) 1077 WP_103138233.1 recombinase RecA Machinery gene
  CLI64_RS16555 (CLI64_16440) - 4003816..4004835 (-) 1020 WP_103138234.1 tRNA-dihydrouridine synthase -
  CLI64_RS31605 (CLI64_16445) - 4005122..4005283 (+) 162 WP_103138235.1 CopG family transcriptional regulator -
  CLI64_RS16565 (CLI64_16450) - 4006036..4007568 (+) 1533 WP_103138236.1 protein kinase -
  CLI64_RS16570 (CLI64_16455) - 4007754..4008428 (+) 675 WP_103138237.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38445.76 Da        Isoelectric Point: 4.8950

>NTDB_id=245710 CLI64_RS16550 WP_103138233.1 4002516..4003592(-) (recA) [Nostoc sp. CENA543]
MAINTDTSGKQKALNMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQREGGIAAFVDAEHALDPTYAAALGVDIDNLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDE
FGNRVKVKVAKNKVAPPFRVAEFDIIFGKGVSTIGCLVDLAEETGILVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFTE
QIKKLVREKLDKGAVVSANSVSKVNEDDEDEDVDLEEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=245710 CLI64_RS16550 WP_103138233.1 4002516..4003592(-) (recA) [Nostoc sp. CENA543]
ATGGCTATTAATACCGATACTTCCGGCAAGCAAAAAGCACTCAATATGGTACTCAACCAAATTGAGCGCAGCTTCGGTAA
AGGAGCAATTATGCGCCTGGGTGATGCTACCCGAATGCGGGTAGAAACCATCTCCACTGGGGCGTTGACTTTGGATTTGG
CTTTGGGTGGAGGTTTACCCAAGGGACGGGTGATTGAGATTTATGGGCCGGAAAGTTCCGGTAAGACGACTGTAGCACTG
CACGCGATCGCAGAAGTACAAAGAGAAGGCGGTATTGCTGCTTTTGTAGACGCTGAACACGCCCTTGATCCTACCTACGC
TGCGGCTTTAGGTGTAGATATTGACAATCTGTTGGTTTCCCAACCTGACACCGGTGAAGCAGCTTTGGAAATCGTTGATC
AATTAGTACGCTCCGCCGCCGTTGACATCGTAGTTATCGACTCCGTTGCGGCGTTAGTTCCCCGTGCAGAAATTGAAGGA
GATATGGGAGACGCTCACGTTGGTTTGCAAGCCAGGTTAATGAGCCAAGCCCTACGTAAAATTACTGGTAACATTGGTAA
GTCAGGCTGCACAGTTATATTTATTAACCAGCTCCGCCAAAAAATTGGTGTCACCTACGGTAGTCCTGAAACCACCACCG
GTGGTAACGCCTTGAAATTCTACGCTTCAGTTCGTCTAGATATTCGTCGTATTCAAACTTTGAAAAAAGGCTCAGACGAA
TTTGGCAACCGTGTAAAAGTCAAAGTTGCTAAAAATAAAGTGGCTCCACCTTTTAGAGTGGCAGAATTTGACATTATTTT
TGGTAAGGGCGTTTCTACTATCGGTTGTTTAGTAGACTTAGCTGAAGAAACAGGGATTTTGGTTCGTAAAGGAGCTTGGT
ATAGTTACAACGGTGATAACATCTCTCAAGGACGAGATAACGCTATTAAGTATCTAGAAGAAAAGCCAGAATTTACAGAA
CAAATTAAGAAACTGGTGCGAGAAAAGCTCGATAAGGGTGCTGTTGTATCTGCTAATTCAGTATCTAAAGTCAATGAAGA
CGACGAAGACGAAGATGTTGATTTAGAAGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I8A8Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.61

97.486

0.62
  recA Acinetobacter baumannii D1279779

63.506

97.207

0.617
  recA Pseudomonas stutzeri DSM 10701

63.873

96.648

0.617
  recA Ralstonia pseudosolanacearum GMI1000

63.444

92.458

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.651

92.737

0.581
  recA Streptococcus mutans UA159

57.584

99.441

0.573
  recA Streptococcus pneumoniae TIGR4

57.746

99.162

0.573
  recA Streptococcus pneumoniae Rx1

57.746

99.162

0.573
  recA Streptococcus pneumoniae D39

57.746

99.162

0.573
  recA Streptococcus pneumoniae R6

57.746

99.162

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

58.12

98.045

0.57
  recA Glaesserella parasuis strain SC1401

58.453

97.486

0.57
  recA Neisseria gonorrhoeae strain FA1090

63.75

89.385

0.57
  recA Neisseria gonorrhoeae MS11

63.75

89.385

0.57
  recA Neisseria gonorrhoeae MS11

63.75

89.385

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

89.944

0.57
  recA Vibrio cholerae strain A1552

63.354

89.944

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.841

96.369

0.567
  recA Helicobacter pylori strain NCTC11637

61.145

92.737

0.567
  recA Helicobacter pylori 26695

61.145

92.737

0.567
  recA Streptococcus mitis SK321

56.267

100

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

91.62

0.553
  recA Streptococcus pyogenes NZ131

60.123

91.061

0.547
  recA Streptococcus mitis NCTC 12261

60.372

90.223

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.752

90.223

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.458

0.531

Multiple sequence alignment