Detailed information NTG0245665

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: CLM75_RS05935
• Genome accession: NZ_CP023272
• Coordinates: 1304136..1305194 (+)
• Length: 352 a.a.
• NCBI ID: WP_003189042.1
• Uniprot ID: A0A7Y7ZLK5
• Organism: Pseudomonas lurida strain MYb11
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1290311..1305194	1304136..1305194	within	0

Gene organization within MGE regions

Location: 1290311..1305194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLM75_RS05840 (CLM75_05810)	-	1290311..1291045 (+)	735	WP_080758221.1	helix-turn-helix transcriptional regulator	-
CLM75_RS05845 (CLM75_05815)	-	1291639..1291983 (+)	345	WP_034102420.1	phage holin family protein	-
CLM75_RS05850 (CLM75_05820)	-	1292005..1292520 (+)	516	WP_034102421.1	hypothetical protein	-
CLM75_RS05855 (CLM75_05825)	-	1292524..1293135 (+)	612	WP_034102422.1	phage baseplate assembly protein V	-
CLM75_RS05860 (CLM75_05830)	-	1293145..1293477 (+)	333	WP_034102423.1	phage baseplate protein	-
CLM75_RS05865 (CLM75_05835)	-	1293474..1294469 (+)	996	WP_105161725.1	baseplate J/gp47 family protein	-
CLM75_RS05870 (CLM75_05840)	-	1294466..1295095 (+)	630	WP_105161726.1	phage tail protein I	-
CLM75_RS05875 (CLM75_05845)	-	1295096..1296526 (+)	1431	WP_234010396.1	phage tail protein	-
CLM75_RS05880 (CLM75_05850)	-	1296539..1296964 (+)	426	WP_234010398.1	phage tail assembly chaperone	-
CLM75_RS28255	-	1297056..1297229 (+)	174	WP_164403681.1	hypothetical protein	-
CLM75_RS05885 (CLM75_05855)	-	1297232..1298398 (+)	1167	WP_105161728.1	phage tail protein	-
CLM75_RS05890 (CLM75_05860)	-	1298398..1298904 (+)	507	WP_069022024.1	phage major tail tube protein	-
CLM75_RS05895 (CLM75_05865)	-	1298956..1299528 (+)	573	WP_105161729.1	phage tail assembly protein	-
CLM75_RS28635	-	1299525..1299650 (+)	126	WP_010212704.1	hypothetical protein	-
CLM75_RS05900 (CLM75_05870)	-	1299657..1300793 (+)	1137	WP_105161730.1	glycine zipper domain-containing protein	-
CLM75_RS05905 (CLM75_05875)	-	1300793..1301176 (+)	384	WP_069022032.1	phage tail protein	-
CLM75_RS05910 (CLM75_05880)	-	1301169..1301381 (+)	213	WP_069022034.1	tail protein X	-
CLM75_RS05915 (CLM75_05885)	-	1301391..1302401 (+)	1011	WP_105161731.1	contractile injection system protein, VgrG/Pvc8 family	-
CLM75_RS05920 (CLM75_05890)	-	1302423..1302980 (+)	558	WP_105161732.1	glycoside hydrolase family 19 protein	-
CLM75_RS05925 (CLM75_05895)	-	1302968..1303468 (+)	501	WP_105163105.1	lysis system i-spanin subunit Rz	-
CLM75_RS05930 (CLM75_05900)	-	1303551..1304051 (+)	501	WP_034102437.1	CinA family protein	-
CLM75_RS05935 (CLM75_05905)	recA	1304136..1305194 (+)	1059	WP_003189042.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37580.12 Da
• Isoelectric Point: 5.3036

>NTDB_id=245665 CLM75_RS05935 WP_003189042.1 1304136..1305194(+) (recA) [Pseudomonas lurida strain MYb11]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI

Nucleotide

• Length: 1059 bp

>NTDB_id=245665 CLM75_RS05935 WP_003189042.1 1304136..1305194(+) (recA) [Pseudomonas lurida strain MYb11]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCACTGGACCCTGAATACGCCGGTAAGCTGGG
CGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGTTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAATGGCGAGATGATCGACCTGGGCGTTCTGCATGGTTTCGTCGAGAAGTCCGGCGCTTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAAGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATCGCTGCCACGCTTGAGAAG
CAGATCCGTGACAAGCTGCTCACCGCAGCGCCAGACGTGAAAGCTGCCGCCAACCGTGAGCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGATATCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A7Y7ZLK5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	87.5	100	0.875
recA	Acinetobacter baylyi ADP1	75	97.727	0.733
recA	Acinetobacter baumannii D1279779	73.178	97.443	0.713
recA	Vibrio cholerae O1 biovar El Tor strain E7946	75	93.182	0.699
recA	Vibrio cholerae strain A1552	75	93.182	0.699
recA	Glaesserella parasuis strain SC1401	69.034	100	0.69
recA	Ralstonia pseudosolanacearum GMI1000	70.149	95.17	0.668
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae strain FA1090	72.222	92.045	0.665
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.526	92.898	0.599
recA	Helicobacter pylori strain NCTC11637	59.659	100	0.597
recA	Helicobacter pylori 26695	59.091	100	0.591
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.677	94.886	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	61.682	91.193	0.562
recA	Streptococcus mutans UA159	60	92.33	0.554
recA	Streptococcus mitis SK321	54.83	100	0.548
recA	Streptococcus pyogenes NZ131	58.232	93.182	0.543
recA	Streptococcus pneumoniae D39	58.589	92.614	0.543
recA	Streptococcus pneumoniae TIGR4	58.589	92.614	0.543
recA	Streptococcus pneumoniae Rx1	58.589	92.614	0.543
recA	Streptococcus pneumoniae R6	58.589	92.614	0.543
recA	Streptococcus mitis NCTC 12261	58.824	91.761	0.54
recA	Latilactobacillus sakei subsp. sakei 23K	58.879	91.193	0.537
recA	Lactococcus lactis subsp. cremoris KW2	57.276	91.761	0.526
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.748	92.614	0.526