Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLH39_RS08940 Genome accession   NZ_CP023256
Coordinates   1973995..1975077 (+) Length   360 a.a.
NCBI ID   WP_021446515.1    Uniprot ID   U1ZS57
Organism   Alcaligenes faecalis strain c16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968995..1980077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLH39_RS08925 (CLH39_08940) - 1969953..1971530 (-) 1578 WP_230940555.1 MFS transporter -
  CLH39_RS08930 (CLH39_08945) - 1971631..1973088 (-) 1458 WP_083053418.1 sensor histidine kinase -
  CLH39_RS08935 (CLH39_08950) - 1973099..1973788 (-) 690 WP_003799515.1 response regulator transcription factor -
  CLH39_RS08940 (CLH39_08955) recA 1973995..1975077 (+) 1083 WP_021446515.1 recombinase RecA Machinery gene
  CLH39_RS08945 (CLH39_08960) recX 1975290..1975709 (+) 420 WP_238441777.1 recombination regulator RecX -
  CLH39_RS08950 (CLH39_08965) - 1975877..1976797 (-) 921 WP_026483398.1 LysR family transcriptional regulator -
  CLH39_RS08955 (CLH39_08970) metE 1976915..1979209 (+) 2295 WP_203145761.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  CLH39_RS08960 (CLH39_08975) - 1979482..1980060 (+) 579 WP_035272843.1 DUF2889 domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38749.42 Da        Isoelectric Point: 5.5995

>NTDB_id=245503 CLH39_RS08940 WP_021446515.1 1973995..1975077(+) (recA) [Alcaligenes faecalis strain c16]
MDDKNSKAVASERSKALAAALSQIEKQFGKGSIMRYGDDNVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKLKGTCAFIDAEHALDVQYAQKLGVNLGDLLISQPDTGEQALEITEALVRSGSVDLIVIDSVAALTPK
AEIEGDMGDSLPGLQARLMSQALRKLTATIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
RGDEMVGNETRVKVVKNKVAPPFKQTEFDIMYGSGISREGEIIDLGVQTGVVDKAGAWYSYDGNRIGQGKDNVREFLKER
PELAREIENKVREKLGVALMSAAVSRPAAAPVVDPAEGEV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=245503 CLH39_RS08940 WP_021446515.1 1973995..1975077(+) (recA) [Alcaligenes faecalis strain c16]
ATGGACGATAAAAACAGCAAAGCAGTGGCCTCGGAACGTTCCAAAGCGCTGGCCGCCGCTCTGTCGCAAATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGTTATGGCGACGACAACGTCGAGCATGACATCCAGGTGGTCTCCACGGGTTCCTTGG
GTCTGGACATTGCTTTGGGCGTCGGTGGTCTGCCACGTGGTCGCGTTATTGAAATTTACGGCCCGGAATCTTCGGGTAAA
ACCACGCTGACCCTGCAAGTGATTGCAGAGATGCAAAAGCTCAAAGGCACATGTGCCTTTATTGACGCCGAACACGCGCT
GGACGTGCAATACGCTCAAAAACTGGGCGTGAACCTGGGCGATCTGTTGATCTCCCAGCCTGATACCGGCGAGCAGGCTC
TGGAAATTACCGAAGCCCTGGTGCGTTCGGGTTCGGTAGACCTGATCGTTATCGACTCGGTGGCCGCCTTGACTCCCAAG
GCTGAAATCGAAGGCGATATGGGCGATTCCTTGCCTGGTCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGTAAATTGAC
GGCTACCATCAAACGCGCTAACTGCATGGTCATCTTCATTAACCAGATCCGTATGAAGATTGGCGTCATGTTCGGCAACC
CTGAAACCACCACGGGTGGTAACGCGCTGAAGTTTTACTCCTCCGTGCGTCTGGATATTCGCCGTATCGGTTCCATCAAG
CGTGGCGACGAAATGGTGGGTAACGAGACCCGCGTTAAAGTGGTCAAGAACAAGGTTGCGCCTCCTTTCAAGCAAACCGA
ATTCGACATTATGTATGGCAGCGGTATTTCCCGCGAAGGCGAGATTATCGATCTGGGCGTACAAACTGGCGTGGTCGACA
AGGCAGGTGCCTGGTATAGCTACGACGGCAACCGCATTGGTCAGGGTAAGGACAATGTGCGCGAATTCCTGAAAGAGCGC
CCCGAGTTGGCCCGCGAAATCGAAAACAAAGTGCGTGAAAAGCTGGGCGTTGCCCTGATGAGCGCTGCTGTCAGCCGTCC
AGCCGCTGCTCCTGTGGTTGATCCGGCCGAGGGAGAAGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U1ZS57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.525

94.722

0.772
  recA Pseudomonas stutzeri DSM 10701

70.145

95.833

0.672
  recA Acinetobacter baumannii D1279779

72.446

89.722

0.65
  recA Acinetobacter baylyi ADP1

71.827

89.722

0.644
  recA Neisseria gonorrhoeae MS11

69.789

91.944

0.642
  recA Neisseria gonorrhoeae MS11

69.789

91.944

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.789

91.944

0.642
  recA Vibrio cholerae strain A1552

71.517

89.722

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

89.722

0.642
  recA Glaesserella parasuis strain SC1401

70.988

90

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

91.389

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

90.833

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

91.389

0.592
  recA Helicobacter pylori 26695

63.939

91.667

0.586
  recA Helicobacter pylori strain NCTC11637

63.636

91.667

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

89.722

0.567
  recA Streptococcus pneumoniae D39

60.417

93.333

0.564
  recA Streptococcus pneumoniae Rx1

60.417

93.333

0.564
  recA Streptococcus pneumoniae R6

60.417

93.333

0.564
  recA Streptococcus pneumoniae TIGR4

60.417

93.333

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

90.833

0.561
  recA Streptococcus mitis SK321

59.292

94.167

0.558
  recA Streptococcus mitis NCTC 12261

59.292

94.167

0.558
  recA Streptococcus pyogenes NZ131

59.403

93.056

0.553
  recA Streptococcus mutans UA159

58.929

93.333

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.637

94.167

0.533

Multiple sequence alignment