Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSYC_RS08970 Genome accession   NC_007204
Coordinates   2136062..2137120 (+) Length   352 a.a.
NCBI ID   WP_011280993.1    Uniprot ID   Q4FQX8
Organism   Psychrobacter arcticus 273-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2131062..2142120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYC_RS08960 (Psyc_1730) - 2133052..2133981 (-) 930 WP_011280991.1 DUF2628 domain-containing protein -
  PSYC_RS08965 (Psyc_1731) trmB 2134203..2135024 (+) 822 WP_011280992.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PSYC_RS08970 (Psyc_1732) recA 2136062..2137120 (+) 1059 WP_011280993.1 recombinase RecA Machinery gene
  PSYC_RS08975 (Psyc_1733) - 2137298..2138419 (+) 1122 WP_011280994.1 regulatory protein RecX -
  PSYC_RS08980 (Psyc_1734) - 2138488..2139036 (-) 549 WP_011280995.1 YidB family protein -
  PSYC_RS08985 (Psyc_1735) - 2139259..2139717 (-) 459 WP_011280996.1 hypothetical protein -
  PSYC_RS08990 (Psyc_1736) - 2139806..2140087 (-) 282 WP_011280997.1 succinate dehydrogenase assembly factor 2 -
  PSYC_RS08995 (Psyc_1737) folP 2140246..2141142 (-) 897 WP_011280998.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37650.08 Da        Isoelectric Point: 4.8704

>NTDB_id=24434 PSYC_RS08970 WP_011280993.1 2136062..2137120(+) (recA) [Psychrobacter arcticus 273-4]
MDDNKAKALKAALAQIEKQFGKNTIMHLGDDSAALDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAEEIE
AKIRAEKLGVKDDSKAAVVAETNEELASEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=24434 PSYC_RS08970 WP_011280993.1 2136062..2137120(+) (recA) [Psychrobacter arcticus 273-4]
ATGGACGACAATAAAGCCAAAGCCCTTAAAGCTGCGCTCGCTCAAATCGAAAAGCAATTTGGTAAAAATACCATCATGCA
TTTGGGTGATGACTCAGCAGCACTTGATGTCGATGTGGTCTCTACTGGCTCATTAGGTTTAGATATTGCTCTAGGGATTG
GTGGTCTGCCAAAAGGTCGTATCGTTGAAATTTACGGCCCTGAAAGCTCAGGTAAAACGACGATGACCTTACAGGCGATT
GCAGAGTGCCAAAAGCAAGGCGGTGTTTGTGCCTTTATCGATGCTGAGCACGCACTAGATCCAGTATATGCACGCAAGCT
TGGCGTCAATACGGATGATTTACTACTCTCACAGCCTGATAATGGAGAGCAAGCGCTTGAAATTACTGATATGTTGGTAC
GTTCAGGGGCGATCGATATGATCGTTATTGACTCGGTTGCCGCTTTGACACCACGTGCAGAGATTGAAGGCGAGATGGGC
GATTCACATATGGGTCTGCAAGCACGTCTGATGAGCCAAGCCTTACGTAAAATTACTGGTAACGCCAAGCGCTCAAACTG
TATGGTGTTATTTATTAACCAAATTCGTATGAAAATTGGCGTTATGTTTGGTAGCCCTGAGACCACAACCGGTGGTAATG
CGCTTAAATTCTATGCCTCTGTGCGTATGGATATTCGCCGTATTGGTGCGGTGAAGAATGGTGATGAAATCATCGGTAAC
CAAACTCGCGTTAAAGTCATCAAAAATAAAATGGCACCACCATTTCGTCAAGCTGAGTTTGAGATTACTTACGGTGAAGG
TACCAATCACTTAGCCGAAGTGATTGATTTAGGTGTTGAGATTGGTGCGGTTGGTAAAGCGGGTTCTTGGTACAGCTATG
GTGATGAAAAAATCGGTCAAGGCAAAGCCAATTCTGTACTGTTCTTAAAAGAGAACCCTGCTATTGCTGAAGAGATAGAA
GCCAAAATCCGTGCTGAAAAGCTTGGCGTAAAGGATGATAGCAAAGCAGCGGTCGTGGCTGAGACTAATGAAGAACTAGC
CTCTGAACCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4FQX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

77.391

98.011

0.759
  recA Acinetobacter baumannii D1279779

75.942

98.011

0.744
  recA Pseudomonas stutzeri DSM 10701

71.93

97.159

0.699
  recA Glaesserella parasuis strain SC1401

68.222

97.443

0.665
  recA Vibrio cholerae strain A1552

71.296

92.045

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.296

92.045

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.769

92.33

0.653
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Ralstonia pseudosolanacearum GMI1000

69.091

93.75

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

92.33

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

95.17

0.594
  recA Helicobacter pylori strain NCTC11637

63.692

92.33

0.588
  recA Helicobacter pylori 26695

63.385

92.33

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.58

92.045

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

59.697

93.75

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

91.477

0.56
  recA Streptococcus mitis NCTC 12261

55.807

100

0.56
  recA Lactococcus lactis subsp. cremoris KW2

57.91

95.17

0.551
  recA Streptococcus pneumoniae TIGR4

58.133

94.318

0.548
  recA Streptococcus pneumoniae D39

58.133

94.318

0.548
  recA Streptococcus pneumoniae R6

58.133

94.318

0.548
  recA Streptococcus pneumoniae Rx1

58.133

94.318

0.548
  recA Streptococcus mitis SK321

57.27

95.739

0.548
  recA Streptococcus mutans UA159

56.845

95.455

0.543
  recA Streptococcus pyogenes NZ131

57.362

92.614

0.531

Multiple sequence alignment