Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ssp1_RS07475 Genome accession   NZ_CP022881
Coordinates   1544242..1545288 (-) Length   348 a.a.
NCBI ID   WP_002451246.1    Uniprot ID   A0A2T4Q2T6
Organism   Staphylococcus sp. M0911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539242..1550288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS07460 (Ssp1_15070) - 1540952..1541746 (-) 795 WP_075777955.1 TIGR00282 family metallophosphoesterase -
  ssp1_RS07465 (Ssp1_15080) - 1541909..1542124 (+) 216 WP_002451248.1 hypothetical protein -
  ssp1_RS07470 (Ssp1_15090) rny 1542241..1543800 (-) 1560 WP_118828167.1 ribonuclease Y -
  ssp1_RS07475 (Ssp1_15100) recA 1544242..1545288 (-) 1047 WP_002451246.1 recombinase RecA Machinery gene
  ssp1_RS07480 (Ssp1_15110) - 1545455..1546606 (-) 1152 WP_075777954.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ssp1_RS07485 (Ssp1_15120) pgsA 1546780..1547355 (-) 576 WP_002450528.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ssp1_RS07490 (Ssp1_15130) - 1547386..1547778 (-) 393 WP_002450529.1 helix-turn-helix domain-containing protein -
  ssp1_RS07495 (Ssp1_15140) - 1547798..1548634 (-) 837 WP_002450530.1 YmfK family protein -
  ssp1_RS07500 (Ssp1_15150) - 1548776..1549480 (-) 705 WP_075777952.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37828.74 Da        Isoelectric Point: 5.0133

>NTDB_id=242478 ssp1_RS07475 WP_002451246.1 1544242..1545288(-) (recA) [Staphylococcus sp. M0911]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=242478 ssp1_RS07475 WP_002451246.1 1544242..1545288(-) (recA) [Staphylococcus sp. M0911]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACATGCCATTGCA
GAAACACAAAAAAATGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCTTTAGATCCTGTTTATGCTCAAGCATTAGG
CGTAGATATTGATAACTTATACTTATCACAACCTGACCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTGGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGAGATTAATGTCTCAAGCATTACGTAAACTCTCTGGTGCTATTTCTAAATCAAATACGAC
TGCTATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTAATGTTCGGTAATCCAGAAACAACACCAGGTGGAAGAGCAT
TGAAATTCTATAGTTCTGTTCGATTAGAAGTTCGTCGTGCCGAACAATTGAAGCAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTTAGAGTTGCCGAAGTTGATATTATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGTGCTTGGTATTCTTATAATG
GGGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATTGATCAA
AAACTACGTGAAAAGCTCGGTATTTTTGATGGTGACGTAGAAGAAAAAGAAGAAGACGCTCCGAAGTCATTATTTGATGA
AGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4Q2T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.678

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

69.795

97.989

0.684
  recA Streptococcus pneumoniae TIGR4

65.903

100

0.661
  recA Streptococcus pneumoniae Rx1

65.903

100

0.661
  recA Streptococcus pneumoniae D39

65.903

100

0.661
  recA Streptococcus pneumoniae R6

65.903

100

0.661
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mutans UA159

64.857

100

0.652
  recA Streptococcus mitis NCTC 12261

65.507

99.138

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65

97.701

0.635
  recA Streptococcus mitis SK321

66.366

95.69

0.635
  recA Acinetobacter baumannii D1279779

63.218

100

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.261

94.54

0.626
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Acinetobacter baylyi ADP1

66.564

93.678

0.624
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.939

94.253

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.678

0.612
  recA Vibrio cholerae strain A1552

65.337

93.678

0.612
  recA Pseudomonas stutzeri DSM 10701

62.883

93.678

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Glaesserella parasuis strain SC1401

61.728

93.103

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.954

0.557

Multiple sequence alignment