Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CJD48_RS03940 Genome accession   NZ_CP022723
Coordinates   933635..934825 (+) Length   396 a.a.
NCBI ID   WP_115954895.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928635..939825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJD48_RS03920 (CJD48_03900) pgsA 931111..931770 (+) 660 WP_003820768.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJD48_RS03925 (CJD48_03905) - 931842..932387 (+) 546 WP_003813803.1 nicotinamide-nucleotide amidohydrolase family protein -
  CJD48_RS03930 (CJD48_03910) - 932448..932960 (+) 513 WP_053825132.1 helix-turn-helix transcriptional regulator -
  CJD48_RS03935 (CJD48_03915) - 933132..933365 (+) 234 WP_003813799.1 DUF3046 domain-containing protein -
  CJD48_RS03940 (CJD48_03920) recA 933635..934825 (+) 1191 WP_115954895.1 recombinase RecA Machinery gene
  CJD48_RS03945 (CJD48_03925) - 934822..935442 (+) 621 WP_115954897.1 regulatory protein RecX -
  CJD48_RS03955 (CJD48_03935) - 936295..936597 (-) 303 WP_232047910.1 transcriptional regulator -
  CJD48_RS03960 (CJD48_03940) raiA 937055..937720 (+) 666 WP_003813792.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 41504.95 Da        Isoelectric Point: 5.0856

>NTDB_id=241967 CJD48_RS03940 WP_115954895.1 933635..934825(+) (recA) [Bifidobacterium bifidum strain S6]
MAQRTTSKGGAGKAASKASVREAASNGPVGDGIDPRRKAALDSALEQVEKSFGKGSAMRLGDKPEQNVEVIPTGSLALDL
ALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGEQALEIA
DMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETT
TGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTKVKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGS
WFTYDGDQLGQGRENVRKFLKDNPQITEEIGNKVKAEFGLIEVPDQLADGESATDGDAPETAPEDGAPTAAASPAA

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=241967 CJD48_RS03940 WP_115954895.1 933635..934825(+) (recA) [Bifidobacterium bifidum strain S6]
ATGGCACAGCGTACGACCTCGAAGGGTGGGGCGGGCAAGGCCGCGTCGAAGGCCTCTGTTCGTGAGGCCGCAAGCAATGG
GCCGGTGGGGGACGGCATCGATCCCCGACGCAAGGCGGCTTTGGACTCCGCTCTGGAGCAAGTGGAGAAAAGCTTCGGCA
AGGGATCCGCGATGCGCTTGGGCGACAAGCCCGAGCAGAACGTCGAGGTGATTCCCACCGGATCGCTGGCGTTGGATCTG
GCCCTGGGTATCGGCGGTCTGCCGAAGGGGCGCATCGTCGAGATCTATGGCCCTGAATCGTCCGGCAAGACGACGCTGGC
GCTACATGTGGTCGCCAACGCGCAGAAGAACGGCGGGGTGGCGGCATTCATCGATGCCGAGCACGCGCTGGATCCGGTCT
ATGCCCGGCATCTGGGTGTCGACACCGATTCCCTGATCGTCTCGCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCGCG
GACATGCTCATCCGGTCGGGTGCCCTTGACGTCATCGTCATCGATTCGGTCGCGGCCCTGGTTCCCAAGGCGGAGATCGA
AGGCGATATGGGTGACAGCCATGTCGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTCAGGAAGATGACCGGCGCTCTGG
CACAGGCCGGCACCACGGCCATCTTCATCAACCAGCTGCGAGAGAAGATCGGCGTGTTCTTTGGCAACCCCGAAACCACG
ACCGGTGGCAAGGCGCTGAAATTCTATGCGTCGGTGCGTCTGGATATCCGCCGCATCCAGACCATCAAGAACGGCGAGGA
GGCCGTGGGCAACCGCACCAAGGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCGTTCAAGTCCGCCGAGTTCGATGTGC
TGTATGGCGAGGGCATCTCCAAGGAGGGATCCGTCCTGGACATGGCATTGCAGTGCAACGTGGTCAAGAAGTCCGGCTCA
TGGTTCACGTATGACGGGGACCAGCTCGGCCAGGGCCGTGAGAACGTGCGCAAGTTCCTCAAGGACAATCCGCAGATCAC
CGAGGAGATCGGCAACAAGGTCAAGGCGGAATTCGGCCTCATCGAAGTGCCCGATCAGCTGGCCGACGGTGAGTCCGCGA
CGGACGGGGATGCCCCTGAAACGGCGCCGGAGGATGGCGCGCCCACTGCCGCCGCATCGCCTGCCGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(40-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

64.881

84.848

0.551
  recA Neisseria gonorrhoeae MS11

64.881

84.848

0.551
  recA Neisseria gonorrhoeae MS11

64.881

84.848

0.551
  recA Streptococcus pneumoniae R6

60.446

90.657

0.548
  recA Streptococcus pneumoniae TIGR4

60.446

90.657

0.548
  recA Streptococcus pneumoniae Rx1

60.446

90.657

0.548
  recA Streptococcus pneumoniae D39

60.446

90.657

0.548
  recA Acinetobacter baylyi ADP1

64.583

84.848

0.548
  recA Streptococcus mitis SK321

60.907

89.141

0.543
  recA Streptococcus mitis NCTC 12261

60.907

89.141

0.543
  recA Acinetobacter baumannii D1279779

63.235

85.859

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.623

89.141

0.54
  recA Vibrio cholerae strain A1552

60.623

89.141

0.54
  recA Streptococcus mutans UA159

60.34

89.141

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

82.828

0.538
  recA Glaesserella parasuis strain SC1401

62.537

85.606

0.535
  recA Bacillus subtilis subsp. subtilis str. 168

65.123

81.818

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

83.081

0.53
  recA Pseudomonas stutzeri DSM 10701

64.417

82.323

0.53
  recA Helicobacter pylori strain NCTC11637

61.357

85.606

0.525
  recA Helicobacter pylori 26695

61.357

85.606

0.525
  recA Streptococcus pyogenes NZ131

62.727

83.333

0.523
  recA Ralstonia pseudosolanacearum GMI1000

65.815

79.04

0.52
  recA Latilactobacillus sakei subsp. sakei 23K

61.515

83.333

0.513
  recA Lactococcus lactis subsp. cremoris KW2

61.212

83.333

0.51
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

81.061

0.5

Multiple sequence alignment