Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Kalk_RS04305 Genome accession   NZ_CP022684
Coordinates   1026851..1027879 (-) Length   342 a.a.
NCBI ID   WP_101893027.1    Uniprot ID   A0A2K9LHH7
Organism   Ketobacter alkanivorans strain GI5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1021851..1032879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Kalk_RS04285 (Kalk_04285) - 1022279..1022578 (-) 300 WP_101893023.1 hypothetical protein -
  Kalk_RS04290 (Kalk_04290) - 1022673..1024133 (-) 1461 WP_101893024.1 NAD(P)/FAD-dependent oxidoreductase -
  Kalk_RS04295 (Kalk_04295) fnr 1024389..1025150 (-) 762 WP_101893025.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  Kalk_RS04300 (Kalk_04300) hemN 1025230..1026639 (-) 1410 WP_101893026.1 oxygen-independent coproporphyrinogen III oxidase -
  Kalk_RS04305 (Kalk_04305) recA 1026851..1027879 (-) 1029 WP_101893027.1 recombinase RecA Machinery gene
  Kalk_RS04310 (Kalk_04310) - 1027953..1028525 (-) 573 WP_267892416.1 CinA family protein -
  Kalk_RS04315 (Kalk_04315) mutS 1028724..1031306 (+) 2583 WP_101893028.1 DNA mismatch repair protein MutS -
  Kalk_RS04320 (Kalk_04320) fdxA 1031426..1031749 (+) 324 WP_101893029.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36524.92 Da        Isoelectric Point: 5.5067

>NTDB_id=241638 Kalk_RS04305 WP_101893027.1 1026851..1027879(-) (recA) [Ketobacter alkanivorans strain GI5]
MDNNKKKALGAALSQIERQFGKGAVMRMGDQELQAIPAISTGSLGLDIALGIGGLPKGRIVEIFGPESSGKTTLTLSAVA
QAQKQGLTCAFVDAEHALDPTYAQKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKITGSVKQANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKQGEEVVGNE
TRVKVVKNKVAPPFKQAEFQILYGSGIYHMGEVLDLGVACGLVDKSGAWYAYQGNKIGQGKANASKFLEDNLDVANTIEQ
EIRNQMLSVKPPVKEAEALEEA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=241638 Kalk_RS04305 WP_101893027.1 1026851..1027879(-) (recA) [Ketobacter alkanivorans strain GI5]
ATGGACAACAACAAGAAAAAGGCGCTAGGTGCTGCACTTTCTCAAATCGAGCGTCAGTTCGGTAAAGGTGCTGTAATGCG
TATGGGTGATCAGGAGTTGCAAGCTATTCCTGCCATCTCAACCGGTTCCCTCGGCTTGGATATTGCGCTGGGTATTGGTG
GCTTGCCTAAAGGCCGTATTGTTGAAATCTTCGGGCCAGAATCTTCCGGTAAAACCACTTTAACCCTCAGTGCAGTGGCG
CAGGCACAAAAGCAGGGCTTAACCTGCGCTTTTGTGGATGCAGAGCATGCGTTGGATCCAACCTATGCCCAAAAGCTAGG
TGTTAATGTTGATGATCTGTTGGTGTCCCAGCCTGATACTGGTGAGCAGGCGTTGGAAATTACCGACATGCTGGTGCGCT
CCAACGCGGTTGATGTCATTGTTGTGGACTCTGTTGCCGCGCTGGTGCCCAGAGCTGAAATCGAAGGTGAAATGGGCGAT
AGTCATGTGGGGCTGCAGGCTCGCTTGATGTCTCAGGCTCTGCGTAAAATCACCGGTAGCGTCAAACAGGCCAATTGTCT
GGTCATTTTTATCAACCAGATTCGTATGAAAATCGGTGTTATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCGC
TTAAGTTTTATGCCTCTGTGCGCTTGGATATTCGTCGCACCGGTGCAGTGAAACAAGGTGAAGAAGTGGTGGGTAACGAA
ACCCGAGTCAAAGTTGTGAAAAATAAGGTGGCCCCACCGTTTAAGCAGGCCGAGTTCCAGATCCTCTATGGCTCTGGCAT
CTACCACATGGGAGAGGTGCTGGATCTGGGGGTAGCCTGTGGCTTGGTGGATAAATCTGGTGCCTGGTATGCGTATCAGG
GCAACAAAATTGGTCAGGGTAAAGCCAATGCGTCCAAGTTTCTGGAGGATAACCTCGATGTGGCTAACACAATCGAACAG
GAGATCCGTAACCAGATGTTGAGCGTTAAGCCACCGGTTAAGGAAGCCGAGGCTCTGGAAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9LHH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.232

99.708

0.81
  recA Acinetobacter baumannii D1279779

74.164

96.199

0.713
  recA Acinetobacter baylyi ADP1

74.085

95.906

0.711
  recA Vibrio cholerae strain A1552

73.171

95.906

0.702
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.171

95.906

0.702
  recA Glaesserella parasuis strain SC1401

70.659

97.661

0.69
  recA Neisseria gonorrhoeae MS11

71.296

94.737

0.675
  recA Neisseria gonorrhoeae MS11

71.296

94.737

0.675
  recA Neisseria gonorrhoeae strain FA1090

71.296

94.737

0.675
  recA Ralstonia pseudosolanacearum GMI1000

70.122

95.906

0.673
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

95.614

0.617
  recA Helicobacter pylori strain NCTC11637

62.08

95.614

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

96.784

0.591
  recA Helicobacter pylori 26695

61.468

95.614

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

94.444

0.585
  recA Streptococcus mutans UA159

60.856

95.614

0.582
  recA Streptococcus mitis SK321

60.429

95.322

0.576
  recA Streptococcus mitis NCTC 12261

60.123

95.322

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

93.86

0.57
  recA Streptococcus pneumoniae Rx1

59.509

95.322

0.567
  recA Streptococcus pneumoniae D39

59.509

95.322

0.567
  recA Streptococcus pneumoniae R6

59.509

95.322

0.567
  recA Streptococcus pneumoniae TIGR4

59.509

95.322

0.567
  recA Streptococcus pyogenes NZ131

59.692

95.029

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.187

95.614

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.585

94.444

0.544

Multiple sequence alignment