Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYC_RS06180 Genome accession   NC_006576
Coordinates   1279114..1280184 (+) Length   356 a.a.
NCBI ID   WP_011243477.1    Uniprot ID   Q31RD9
Organism   Synechococcus elongatus PCC 6301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274114..1285184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS06155 (syc1160_c) - 1274450..1275412 (-) 963 WP_011377543.1 bile acid:sodium symporter family protein -
  SYC_RS06160 (syc1161_d) msrB 1275532..1276059 (+) 528 WP_407830096.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SYC_RS06165 (syc1162_c) - 1276050..1277183 (-) 1134 WP_011243474.1 MlaD family protein -
  SYC_RS06170 (syc1163_c) - 1277211..1278002 (-) 792 WP_231621357.1 ABC transporter ATP-binding protein -
  SYC_RS06175 (syc1164_d) - 1278439..1278999 (+) 561 WP_011243476.1 DUF3611 family protein -
  SYC_RS06180 (syc1165_d) recA 1279114..1280184 (+) 1071 WP_011243477.1 recombinase RecA Machinery gene
  SYC_RS13990 (syc1166_c) - 1280430..1280594 (-) 165 WP_011243478.1 hypothetical protein -
  SYC_RS06185 (syc1167_c) pgeF 1280751..1281530 (-) 780 WP_011243479.1 peptidoglycan editing factor PgeF -
  SYC_RS06190 (syc1168_d) - 1281576..1282346 (+) 771 WP_011243480.1 biotin--[acetyl-CoA-carboxylase] ligase -
  SYC_RS06195 (syc1169_d) - 1282431..1283474 (+) 1044 WP_011243481.1 M23 family metallopeptidase -
  SYC_RS06200 (syc1170_c) psb27 1283827..1284228 (-) 402 WP_011377542.1 photosystem II protein Psb27 -
  SYC_RS06205 (syc1171_c) - 1284292..1284519 (-) 228 WP_011377541.1 DUF7219 family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37928.35 Da        Isoelectric Point: 5.8117

>NTDB_id=24148 SYC_RS06180 WP_011243477.1 1279114..1280184(+) (recA) [Synechococcus elongatus PCC 6301]
MASKSDAIAPEKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETISTGALTLDLALGGGLPKGRIIEVYGPESSGKTTL
TLHAIAEVQKQGGIAAFVDAEHALDPVYATSVGVDIDNLLISQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALVPRAEI
EGEMGDAQVGLQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGT
EEYGTRAKVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITHLEEHPDF
RATVEQQVREKLALGAQVSANTVGAAPAKTAEDTDS

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=24148 SYC_RS06180 WP_011243477.1 1279114..1280184(+) (recA) [Synechococcus elongatus PCC 6301]
ATGGCTAGCAAATCTGACGCGATCGCTCCAGAGAAGGAAAAAGCCCTAAATCTCGTGCTCAGTCAGATTGAGCGCAATTT
CGGCAAGGGGGCAATCATGCGCCTTGGCGATGCGGCTCGACTGCGGGTCGAAACGATTTCCACGGGTGCGCTGACGCTTG
ATTTAGCCCTGGGCGGCGGTCTACCCAAGGGGCGGATTATCGAGGTCTACGGCCCTGAAAGCTCGGGTAAAACTACGCTC
ACGCTCCACGCGATCGCAGAAGTCCAAAAGCAGGGTGGGATCGCCGCTTTTGTAGACGCGGAGCATGCTCTCGACCCGGT
TTACGCCACCTCCGTAGGGGTGGACATTGACAATCTGCTGATCTCGCAGCCTGACACCGGCGAGATGGCCCTCGAGATTG
TCGACCAGCTCGTGCGATCGGCCGCCGTCGATATCGTCGTGATCGACTCGGTGGCAGCCCTCGTTCCCCGTGCCGAAATT
GAAGGGGAAATGGGCGACGCCCAAGTGGGTCTGCAGGCTCGCCTGATGAGCCAAGCGATGCGGAAAATTACAGGCAACAT
CGGCAAATCGGGTTGCACGGTTATCTTCCTCAACCAATTGCGCCAAAAAATCGGTGTCACCTACGGCAGCCCCGAGACCA
CCACAGGCGGTCAGGCCCTGAAGTTCTATGCGTCCGTCCGCTTAGATATTCGCCGCATTCAAACCCTGAAGAAGGGCACA
GAAGAGTACGGCACCCGTGCCAAGGTCAAGGTCGTCAAGAACAAAGTGGCACCGCCCTTCCGCATTGCTGAGTTCGACAT
TCTCTTCGGCAAGGGCATTTCTACCCTCGGTTGCCTGGTGGACTTGGCGGAAGAAACCGGCGTCATCCTGCGCAAAGGCG
CCTGGTACAGCTACAACGGCGACAACATCGGCCAAGGGCGCGACAACACAATCACCCACTTGGAAGAGCATCCTGACTTC
CGGGCAACGGTCGAACAGCAGGTGCGCGAAAAATTGGCCCTCGGGGCTCAAGTTTCGGCCAACACAGTCGGGGCAGCGCC
TGCCAAAACCGCTGAAGACACCGACAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31RD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.058

96.91

0.621
  recA Acinetobacter baumannii D1279779

63.188

96.91

0.612
  recA Pseudomonas stutzeri DSM 10701

63.188

96.91

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.157

93.258

0.598
  recA Glaesserella parasuis strain SC1401

59.77

97.753

0.584
  recA Neisseria gonorrhoeae MS11

62.037

91.011

0.565
  recA Neisseria gonorrhoeae strain FA1090

62.037

91.011

0.565
  recA Neisseria gonorrhoeae MS11

62.037

91.011

0.565
  recA Streptococcus pneumoniae Rx1

58.309

96.348

0.562
  recA Streptococcus pneumoniae D39

58.309

96.348

0.562
  recA Streptococcus pneumoniae R6

58.309

96.348

0.562
  recA Streptococcus pneumoniae TIGR4

58.309

96.348

0.562
  recA Vibrio cholerae strain A1552

61.491

90.449

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

90.449

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

60.923

91.292

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

89.888

0.553
  recA Helicobacter pylori strain NCTC11637

58.683

93.82

0.551
  recA Helicobacter pylori 26695

58.683

93.82

0.551
  recA Streptococcus mitis SK321

58.036

94.382

0.548
  recA Streptococcus mitis NCTC 12261

57.738

94.382

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.227

95.225

0.545
  recA Streptococcus mutans UA159

58.182

92.697

0.539
  recA Lactococcus lactis subsp. cremoris KW2

59.259

91.011

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.53

93.258

0.537
  recA Streptococcus pyogenes NZ131

58.104

91.854

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.362

91.573

0.525

Multiple sequence alignment