Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CIG75_RS11580 Genome accession   NZ_CP022657
Coordinates   2805783..2806826 (-) Length   347 a.a.
NCBI ID   WP_172844502.1    Uniprot ID   -
Organism   Tumebacillus algifaecis strain THMBR28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2800783..2811826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIG75_RS11555 (CIG75_11555) spoVS 2801525..2801785 (-) 261 WP_087457906.1 stage V sporulation protein SpoVS -
  CIG75_RS11560 (CIG75_11560) - 2801927..2802742 (-) 816 WP_094236804.1 TIGR00282 family metallophosphoesterase -
  CIG75_RS11565 (CIG75_11565) - 2802797..2803321 (-) 525 WP_094236805.1 hypothetical protein -
  CIG75_RS11570 (CIG75_11570) rny 2803417..2804958 (-) 1542 WP_094236806.1 ribonuclease Y -
  CIG75_RS11575 (CIG75_11575) - 2805083..2805772 (-) 690 WP_094236807.1 regulatory protein RecX -
  CIG75_RS11580 (CIG75_11580) recA 2805783..2806826 (-) 1044 WP_172844502.1 recombinase RecA Machinery gene
  CIG75_RS11585 (CIG75_11585) - 2807022..2808602 (-) 1581 WP_094236808.1 DEAD/DEAH box helicase -
  CIG75_RS11590 (CIG75_11590) - 2808613..2809866 (-) 1254 WP_094236809.1 competence/damage-inducible protein A -
  CIG75_RS11595 (CIG75_11595) pgsA 2809952..2810530 (-) 579 WP_094236810.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37417.59 Da        Isoelectric Point: 4.9689

>NTDB_id=241398 CIG75_RS11580 WP_172844502.1 2805783..2806826(-) (recA) [Tumebacillus algifaecis strain THMBR28]
MALRQIEKQFGKGSVMRLGEAASSYNVETVSTGSLAVDIALGVGGFPRGRIIEVYGPESSGKTTVTLHAIAEVQRTGGQA
AFIDAEHALDPVYAQKLGVNIDELLIAQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARL
MSQALRKLAGAINKSKTIAIFINQIREKVGVMFGNPETTSGGRALKFYSTVRLEVRRAEVLKQGNDMVGSRTKIKVVKNK
VAPPFKQAEVDLMFGEGISREGTLVDMGTDLDIINKSGAWYSYEGERLGQGRENAKQFLKDHPELANKIDGLIREHYQVG
KVQAPDFKATAEELADQEADELLDLDL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=241398 CIG75_RS11580 WP_172844502.1 2805783..2806826(-) (recA) [Tumebacillus algifaecis strain THMBR28]
ATGGCGTTGCGTCAGATTGAGAAACAGTTCGGTAAAGGTTCTGTCATGCGTCTAGGAGAAGCTGCTTCCAGCTACAACGT
GGAAACGGTCTCGACCGGTTCGCTTGCTGTTGATATTGCACTCGGTGTCGGCGGGTTCCCGCGTGGCCGCATCATCGAAG
TGTATGGACCGGAATCTTCTGGTAAAACGACTGTCACCTTGCATGCGATCGCAGAGGTCCAGCGCACGGGCGGCCAAGCG
GCATTTATCGATGCGGAGCACGCGCTCGACCCGGTCTACGCGCAAAAGCTCGGTGTCAACATCGACGAACTGCTGATCGC
GCAGCCGGATACTGGTGAACAAGCGTTGGAAATCGCCGAAGCTTTGGTGCGCTCCGGCGCGGTCGATATCGTGGTTGTGG
ACTCCGTTGCAGCGCTCGTTCCAAAGGCAGAGATTGAAGGCGATATGGGTGACTCCCACGTCGGTCTGCAAGCGCGTCTG
ATGTCTCAAGCGCTACGCAAACTGGCAGGTGCGATCAACAAATCGAAAACGATCGCGATTTTCATCAACCAGATTCGTGA
AAAAGTAGGCGTGATGTTCGGCAACCCGGAAACTACTTCCGGCGGCCGCGCGCTCAAGTTCTACTCCACCGTTCGTCTGG
AAGTGCGTCGTGCCGAAGTGCTCAAGCAAGGCAATGACATGGTTGGCAGCCGCACCAAGATCAAAGTGGTGAAGAACAAG
GTTGCACCGCCGTTCAAACAAGCGGAGGTTGACCTGATGTTTGGTGAAGGCATCTCCCGTGAAGGCACACTGGTCGATAT
GGGGACCGATCTGGACATCATCAACAAATCGGGCGCTTGGTACTCCTATGAAGGGGAACGTCTCGGTCAAGGTCGTGAGA
ACGCGAAGCAGTTCTTGAAAGACCACCCCGAGTTGGCTAACAAGATCGATGGACTGATTCGTGAGCACTATCAAGTAGGC
AAAGTACAAGCGCCTGATTTCAAGGCAACGGCTGAAGAGTTGGCAGACCAAGAAGCGGACGAACTGCTCGACCTCGACCT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.334

91.354

0.752
  recA Latilactobacillus sakei subsp. sakei 23K

71.386

95.677

0.683
  recA Streptococcus pyogenes NZ131

66.571

100

0.671
  recA Streptococcus pneumoniae TIGR4

64.689

100

0.66
  recA Streptococcus pneumoniae Rx1

64.689

100

0.66
  recA Streptococcus pneumoniae D39

64.689

100

0.66
  recA Streptococcus pneumoniae R6

64.689

100

0.66
  recA Streptococcus mitis NCTC 12261

65.33

100

0.657
  recA Streptococcus mitis SK321

65.33

100

0.657
  recA Streptococcus mutans UA159

64.957

100

0.657
  recA Lactococcus lactis subsp. cremoris KW2

67.192

91.354

0.614
  recA Glaesserella parasuis strain SC1401

61.834

97.406

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.805

94.524

0.594
  recA Pseudomonas stutzeri DSM 10701

60.767

97.695

0.594
  recA Vibrio cholerae strain A1552

65.605

90.49

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.605

90.49

0.594
  recA Acinetobacter baylyi ADP1

59.593

99.135

0.591
  recA Neisseria gonorrhoeae strain FA1090

65.484

89.337

0.585
  recA Neisseria gonorrhoeae MS11

65.484

89.337

0.585
  recA Neisseria gonorrhoeae MS11

65.484

89.337

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.372

89.049

0.582
  recA Acinetobacter baumannii D1279779

63.81

90.778

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.994

92.507

0.573
  recA Helicobacter pylori 26695

62.658

91.066

0.571
  recA Helicobacter pylori strain NCTC11637

62.658

91.066

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.754

89.049

0.568

Multiple sequence alignment