Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CHH27_RS09660 Genome accession   NZ_CP022529
Coordinates   2059357..2060427 (-) Length   356 a.a.
NCBI ID   WP_094071400.1    Uniprot ID   A0A222F509
Organism   Labrenzia sp. VG12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2054357..2065427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH27_RS28475 - 2055094..2055219 (+) 126 WP_256386431.1 hypothetical protein -
  CHH27_RS09650 (CHH27_09650) - 2055402..2056367 (+) 966 WP_094071398.1 glycerophosphodiester phosphodiesterase family protein -
  CHH27_RS09655 (CHH27_09655) alaS 2056429..2059086 (-) 2658 WP_094071399.1 alanine--tRNA ligase -
  CHH27_RS09660 (CHH27_09660) recA 2059357..2060427 (-) 1071 WP_094071400.1 recombinase RecA Machinery gene
  CHH27_RS09665 (CHH27_09665) - 2060760..2061701 (+) 942 WP_208988753.1 PfkB family carbohydrate kinase -
  CHH27_RS09670 (CHH27_09670) - 2061791..2062720 (+) 930 WP_094071401.1 pseudouridine-5'-phosphate glycosidase -
  CHH27_RS09675 (CHH27_09675) - 2062726..2065143 (-) 2418 WP_094074638.1 DUF3772 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37994.39 Da        Isoelectric Point: 4.9317

>NTDB_id=240343 CHH27_RS09660 WP_094071400.1 2059357..2060427(-) (recA) [Labrenzia sp. VG12]
MSQSTLRLVESSQMDKTKALDAALSQIERAFGKGSIMKMGQGQAVEVQSVSTGSLGLDIALGIGGLPRGRIVEIYGPESS
GKTTLALHTVAEAQKNGGICAFVDAEHALDPIYARKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
LKDRDEVVGNHTRVKVVKNKLAPPFRQVEFDIIYGEGVSKVGELIDLGVKGNIVEKSGAWFSYNSQRLGQGRENAKQFLR
DNPEVADEIELAIRQNAGLIADAIIDPAGGDEDAGE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=240343 CHH27_RS09660 WP_094071400.1 2059357..2060427(-) (recA) [Labrenzia sp. VG12]
ATGTCACAAAGTACACTTCGTCTCGTAGAAAGCAGCCAGATGGATAAGACAAAAGCGCTTGATGCAGCGCTCAGCCAGAT
CGAACGCGCCTTTGGCAAGGGCTCCATCATGAAGATGGGCCAGGGCCAGGCCGTGGAGGTCCAGTCCGTTTCAACCGGGT
CTCTGGGTCTTGACATTGCCCTTGGGATCGGCGGCCTGCCACGGGGGCGAATTGTTGAAATCTACGGCCCTGAATCGTCG
GGTAAGACCACGCTGGCGCTGCACACGGTGGCCGAAGCCCAGAAGAATGGCGGCATTTGCGCTTTTGTCGATGCGGAACA
CGCGCTCGACCCGATCTACGCCCGCAAGCTGGGGGTGGATATTGACAATCTCCTGATCTCGCAGCCCGATGCCGGCGAAC
AGGCGCTGGAAATTGCCGATACGCTGGTCCGGTCCGGGGCGATTGACGTTCTGGTGATCGATTCCGTTGCCGCCCTGACA
CCGAAGGCCGAGCTTGAAGGCGAGATGGGCGACAGCCTGCCGGGCATGCAGGCACGCCTGATGAGCCAGGCGCTTCGCAA
ACTGACCGCATCGATTTCAAAGTCGAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAAATCGGTGTGATGTTCG
GCTCTCCGGAGACCACCACCGGCGGCAATGCCCTGAAATTCTATGCGTCGGTCCGTCTTGATATTCGTCGCATCGGTTCC
CTCAAGGACCGTGATGAAGTCGTCGGCAACCACACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCTTTCCGTCA
GGTGGAATTCGACATCATCTACGGCGAAGGCGTGTCAAAGGTCGGGGAACTGATCGATCTGGGCGTCAAGGGCAATATCG
TCGAGAAGTCCGGCGCCTGGTTCTCCTACAACAGCCAGCGTCTCGGACAGGGGCGAGAGAATGCCAAACAGTTCCTGAGA
GACAATCCGGAAGTCGCCGACGAGATTGAACTTGCGATCCGTCAGAATGCAGGTCTCATCGCCGATGCGATTATCGACCC
GGCGGGTGGCGACGAAGACGCGGGCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222F509

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.421

96.067

0.657
  recA Ralstonia pseudosolanacearum GMI1000

74.76

87.921

0.657
  recA Neisseria gonorrhoeae MS11

71.963

90.169

0.649
  recA Neisseria gonorrhoeae strain FA1090

71.963

90.169

0.649
  recA Neisseria gonorrhoeae MS11

71.963

90.169

0.649
  recA Glaesserella parasuis strain SC1401

65.057

98.876

0.643
  recA Acinetobacter baumannii D1279779

69.782

90.169

0.629
  recA Pseudomonas stutzeri DSM 10701

70

89.888

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.14

96.348

0.618
  recA Vibrio cholerae strain A1552

68.224

90.169

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.224

90.169

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

64.653

92.978

0.601
  recA Helicobacter pylori 26695

65.846

91.292

0.601
  recA Helicobacter pylori strain NCTC11637

65.231

91.292

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

92.135

0.596
  recA Streptococcus mitis NCTC 12261

57.895

100

0.587
  recA Streptococcus mitis SK321

59.078

97.472

0.576
  recA Streptococcus pneumoniae R6

58.79

97.472

0.573
  recA Streptococcus pneumoniae TIGR4

58.79

97.472

0.573
  recA Streptococcus pneumoniae Rx1

58.79

97.472

0.573
  recA Streptococcus pneumoniae D39

58.79

97.472

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.292

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.975

88.764

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.403

94.101

0.559
  recA Streptococcus mutans UA159

60.303

92.697

0.559
  recA Streptococcus pyogenes NZ131

59.756

92.135

0.551

Multiple sequence alignment