Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CGZ77_RS08810 Genome accession   NZ_CP022527
Coordinates   1788315..1789364 (+) Length   349 a.a.
NCBI ID   WP_009426842.1    Uniprot ID   L1NM36
Organism   Neisseria sp. KEM232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783315..1794364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS08790 (CGZ77_08795) - 1783923..1785737 (+) 1815 WP_009426838.1 SurA N-terminal domain-containing protein -
  CGZ77_RS08795 (CGZ77_08800) - 1785858..1786421 (+) 564 WP_009426839.1 hypothetical protein -
  CGZ77_RS08800 (CGZ77_08805) trxB 1786526..1787473 (+) 948 WP_009426840.1 thioredoxin-disulfide reductase -
  CGZ77_RS08805 (CGZ77_08810) - 1787711..1788202 (+) 492 WP_009426841.1 peptidylprolyl isomerase -
  CGZ77_RS08810 (CGZ77_08815) recA 1788315..1789364 (+) 1050 WP_009426842.1 recombinase RecA Machinery gene
  CGZ77_RS12650 - 1789441..1789569 (+) 129 WP_009426843.1 hypothetical protein -
  CGZ77_RS08815 (CGZ77_08820) - 1789631..1790392 (+) 762 WP_009426844.1 glycosyltransferase family 2 protein -
  CGZ77_RS08820 (CGZ77_08825) - 1790483..1791298 (+) 816 WP_094031118.1 sulfite exporter TauE/SafE family protein -
  CGZ77_RS08825 (CGZ77_08830) - 1791466..1791834 (-) 369 WP_094031119.1 hypothetical protein -
  CGZ77_RS08830 (CGZ77_08835) - 1791954..1792217 (-) 264 WP_157697533.1 hypothetical protein -
  CGZ77_RS08835 (CGZ77_08840) - 1792583..1792903 (-) 321 WP_094031121.1 hypothetical protein -
  CGZ77_RS08840 (CGZ77_08845) rfbB 1792989..1794053 (-) 1065 WP_094031122.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37386.72 Da        Isoelectric Point: 4.7078

>NTDB_id=240322 CGZ77_RS08810 WP_009426842.1 1788315..1789364(+) (recA) [Neisseria sp. KEM232]
MAEDKSKALAAALAQIEKQFGKGSIMKMDGSSPDEDLQVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETI
AQCQKAGGVCAFIDAENAFDPVYARALGVKVEDLLVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGSTQIKKGDESPIG
KETKVKVIKNKVAPPFRTAEFDILYGEGISWEGELIDIGSKLGVIEKSGAWYSYNGAKIGQGKDNVRIWLKENPEVAGEI
EAKIREKAGVNIQITEGTRDETDGDEPEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=240322 CGZ77_RS08810 WP_009426842.1 1788315..1789364(+) (recA) [Neisseria sp. KEM232]
ATGGCAGAAGACAAAAGCAAAGCCCTCGCCGCCGCCCTGGCGCAGATTGAAAAACAGTTCGGCAAAGGCTCCATCATGAA
AATGGACGGCAGCAGCCCCGACGAAGATCTGCAGGTTATTTCCACCGGCTCGCTCGGCCTCGATCTGGCACTGGGCGTCG
GCGGCCTGCCGCGCGGCCGCATCGTCGAAATTTTCGGCCCGGAATCTTCCGGCAAAACCACCCTGTGCCTGGAAACCATC
GCCCAATGCCAAAAAGCGGGCGGCGTATGCGCCTTTATCGACGCCGAAAACGCTTTCGATCCCGTTTATGCCCGCGCCCT
CGGCGTCAAAGTCGAAGACCTGCTGGTCTCCCAGCCCGACACCGGCGAACAGGCGCTGGAAATCTGCGATATGCTGGTGC
GCTCCGGCGGCGTGGACATGGTTGTCATCGACTCGGTTGCCGCCCTCGTGCCCAAAGCCGAAATCGAAGGCGAAATGGGC
GACAGCCACGTCGGCCTGCAAGCACGCCTGATGAGCCAGGCGCTGCGCAAACTCACCGGCCACATCAAAAAAACCAATAC
CCTCGTCGTTTTCATCAACCAAATCCGCATGAAAATCGGCGTCATGTTCGGCAACCCCGAAACCACCACCGGCGGCAACG
CGCTCAAATTCTATTCCTCCGTGCGCATCGACATCCGCGGCAGCACGCAGATTAAAAAAGGCGACGAAAGCCCCATCGGC
AAAGAAACCAAAGTCAAAGTCATCAAAAACAAAGTCGCGCCCCCCTTCCGCACTGCCGAGTTCGACATCCTCTACGGCGA
AGGCATCAGCTGGGAAGGCGAGCTGATCGACATCGGCAGCAAACTCGGCGTCATCGAAAAATCCGGCGCCTGGTACAGCT
ACAACGGAGCGAAAATCGGCCAGGGCAAAGACAACGTCCGCATCTGGCTGAAAGAAAATCCCGAAGTCGCGGGTGAAATC
GAAGCGAAAATCCGCGAAAAAGCCGGTGTGAACATCCAAATCACCGAAGGCACGCGCGACGAAACCGACGGCGACGAGCC
CGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L1NM36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

84.527

100

0.845
  recA Neisseria gonorrhoeae MS11

84.527

100

0.845
  recA Neisseria gonorrhoeae strain FA1090

84.527

100

0.845
  recA Glaesserella parasuis strain SC1401

68.182

100

0.688
  recA Ralstonia pseudosolanacearum GMI1000

75.316

90.544

0.682
  recA Pseudomonas stutzeri DSM 10701

67.816

99.713

0.676
  recA Acinetobacter baylyi ADP1

66.379

99.713

0.662
  recA Vibrio cholerae strain A1552

69.325

93.41

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

93.41

0.648
  recA Acinetobacter baumannii D1279779

64.756

100

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.857

100

0.63
  recA Helicobacter pylori strain NCTC11637

64.865

95.415

0.619
  recA Helicobacter pylori 26695

64.865

95.415

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

94.269

0.616
  recA Streptococcus pneumoniae R6

60.511

100

0.61
  recA Streptococcus pneumoniae Rx1

60.511

100

0.61
  recA Streptococcus pneumoniae D39

60.511

100

0.61
  recA Streptococcus pneumoniae TIGR4

60.511

100

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

64.634

93.983

0.607
  recA Streptococcus mitis NCTC 12261

60.756

98.567

0.599
  recA Streptococcus mutans UA159

61.862

95.415

0.59
  recA Streptococcus mitis SK321

62.424

94.556

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

61.747

95.129

0.587
  recA Streptococcus pyogenes NZ131

62.121

94.556

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.818

94.556

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

92.55

0.556

Multiple sequence alignment