Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CG015_RS03455 Genome accession   NZ_CP022468
Coordinates   717338..718384 (+) Length   348 a.a.
NCBI ID   WP_010320444.1    Uniprot ID   A0A233HL50
Organism   Vibrio anguillarum strain MHK3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712338..723384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS03430 (CG015_03420) cysP 712676..713677 (+) 1002 WP_094123535.1 thiosulfate ABC transporter substrate-binding protein CysP -
  CG015_RS03435 (CG015_03425) cysT 713744..714601 (+) 858 WP_017046719.1 sulfate/thiosulfate ABC transporter permease CysT -
  CG015_RS03440 (CG015_03430) cysW 714612..715475 (+) 864 WP_017046720.1 sulfate ABC transporter permease subunit CysW -
  CG015_RS03445 (CG015_03435) - 715472..716599 (+) 1128 WP_017043744.1 sulfate/molybdate ABC transporter ATP-binding protein -
  CG015_RS03450 (CG015_03440) pncC 716713..717204 (+) 492 WP_129532238.1 nicotinamide-nucleotide amidase -
  CG015_RS03455 (CG015_03445) recA 717338..718384 (+) 1047 WP_010320444.1 recombinase RecA Machinery gene
  CG015_RS03460 (CG015_03450) recX 718420..718923 (+) 504 WP_017047536.1 recombination regulator RecX -
  CG015_RS03465 (CG015_03455) alaS 719045..721627 (+) 2583 WP_019281907.1 alanine--tRNA ligase -
  CG015_RS03470 (CG015_03460) - 721833..723020 (+) 1188 WP_064624385.1 aspartate kinase -
  CG015_RS03475 (CG015_03465) csrA 723113..723310 (+) 198 WP_010320440.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37586.30 Da        Isoelectric Point: 5.0547

>NTDB_id=239711 CG015_RS03455 WP_010320444.1 717338..718384(+) (recA) [Vibrio anguillarum strain MHK3]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQADTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKFLRENPAAAMALDT
KLREMLLNPAELIVEEPILSEMPQEEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=239711 CG015_RS03455 WP_010320444.1 717338..718384(+) (recA) [Vibrio anguillarum strain MHK3]
ATGGACGAAAATAAGCAGAAGGCGCTAGCCGCAGCACTGGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCGATCATGCG
CCTTGGTGACAACCGTACAATGGATGTTGAAACCATTTCTACCGGTTCACTTTCTTTGGATATTGCATTGGGTGCTGGCG
GTTTACCAATGGGACGTATCGTTGAAGTCTACGGCCCTGAATCATCAGGAAAAACAACGTTAACGCTGGAATTGATCGCA
GCAGCACAACGAGTGGGTAAAACCTGTGCTTTTATCGATGCAGAACATGCCCTTGACCCAATTTATGCTAAAAAACTGGG
TGTAAACATCGATGAGCTGTTGGTTTCACAACCTGATACGGGTGAACAAGCGCTTGAAATTTGTGATGCCTTGGCCCGTT
CTGGTGCCATTGATGTTATCGTCATTGACTCTGTGGCTGCACTGACACCAAAAGCTGAAATTGAAGGTGAAATGGGCGAT
AGCCACATGGGCTTGCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGTTAACGGGTAACCTAAAACAGTCCAACTGCAT
GTGTATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACAACAGGTGGTAATGCCC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTACAGGCTCTATTAAAGAGGGTGACGAAGTCGTGGGTAATGAA
ACGCGTATTAAAGTGGTTAAGAACAAAATCGCGGCTCCCTTTAAACAAGCGGATACTCAAATTCTTTACGGACAAGGTTT
TAACCGTGAAGGTGAATTGGTTGATCTTGGCGTGAAACATAAATTGGTTGAGAAAGCGGGCGCTTGGTATAGCTATAACG
GTGATAAAATTGGTCAAGGTAAAGCAAACGCCTGTAAATTCTTGAGAGAGAATCCAGCTGCAGCTATGGCTCTTGATACT
AAGTTACGTGAAATGCTGCTCAATCCAGCCGAGTTAATTGTTGAAGAACCTATTTTGAGCGAAATGCCTCAAGAAGAAGA
GTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.988

96.839

0.891
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.988

96.839

0.891
  recA Pseudomonas stutzeri DSM 10701

74.618

93.966

0.701
  recA Acinetobacter baumannii D1279779

74.006

93.966

0.695
  recA Acinetobacter baylyi ADP1

73.333

94.828

0.695
  recA Glaesserella parasuis strain SC1401

69.578

95.402

0.664
  recA Neisseria gonorrhoeae MS11

67.062

96.839

0.649
  recA Neisseria gonorrhoeae MS11

67.062

96.839

0.649
  recA Neisseria gonorrhoeae strain FA1090

67.062

96.839

0.649
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.368

0.641
  recA Helicobacter pylori 26695

58.841

99.138

0.583
  recA Helicobacter pylori strain NCTC11637

58.551

99.138

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.608

90.805

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Streptococcus mutans UA159

60.923

93.391

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.115

0.566
  recA Streptococcus pneumoniae Rx1

60.681

92.816

0.563
  recA Streptococcus pneumoniae D39

60.681

92.816

0.563
  recA Streptococcus pneumoniae R6

60.681

92.816

0.563
  recA Streptococcus pneumoniae TIGR4

60.681

92.816

0.563
  recA Streptococcus mitis SK321

60.372

92.816

0.56
  recA Streptococcus mitis NCTC 12261

60.372

92.816

0.56
  recA Streptococcus pyogenes NZ131

60

93.391

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.383

95.977

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.058

89.368

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

61.165

88.793

0.543

Multiple sequence alignment