Detailed information NTG0023884

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: PBPR_RS15610
• Genome accession: NC_006370
• Coordinates: 3505387..3506445 (-)
• Length: 352 a.a.
• NCBI ID: WP_041394511.1
• Uniprot ID: Q6LMU2
• Organism: Photobacterium profundum SS9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3500387..3511445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBPR_RS15595 (PBPRA3065)	csrA	3500838..3501035 (-)	198	WP_011219641.1	carbon storage regulator CsrA	-
PBPR_RS15600 (PBPRA3066)	-	3501121..3502299 (-)	1179	WP_011219642.1	aspartate kinase	-
PBPR_RS15605 (PBPRA3067)	alaS	3502316..3504937 (-)	2622	WP_041394510.1	alanine--tRNA ligase	-
PBPR_RS15610 (PBPRA3068)	recA	3505387..3506445 (-)	1059	WP_041394511.1	recombinase RecA	Machinery gene
PBPR_RS15615 (PBPRA3069)	-	3506571..3507062 (-)	492	WP_011219645.1	CinA family protein	-
PBPR_RS15620 (PBPRA3070)	mutS	3507321..3509855 (+)	2535	WP_414811575.1	DNA mismatch repair protein MutS	-
PBPR_RS15625 (PBPRA3071)	rpoS	3509986..3510987 (-)	1002	WP_041394512.1	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37745.50 Da
• Isoelectric Point: 6.5040

>NTDB_id=23884 PBPR_RS15610 WP_041394511.1 3505387..3506445(-) (recA) [Photobacterium profundum SS9]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNKTMDIETVSTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIA
SAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGKANSCKHLVENPAIAEEIEK
LLRDMLLSPVGEEVEKADVKKDAKKDAAEALK

Nucleotide

• Length: 1059 bp

>NTDB_id=23884 PBPR_RS15610 WP_041394511.1 3505387..3506445(-) (recA) [Photobacterium profundum SS9]
ATGGACGATAATAAGCAGAAGGCTCTTGCCGCAGCATTAGGCCAGATTGAAAAGCAGTTTGGTAAAGGCTCAATCATGAG
ATTGGGCGATAATAAGACAATGGATATCGAAACGGTATCGACAGGTTCTTTAGCTCTGGATATTGCTCTAGGTGCTGGCG
GTTTGCCAATGGGGCGTATTGTCGAGATTTACGGTCCTGAATCATCAGGTAAAACAACCCTAACTCTTGAAGTTATTGCC
TCCGCTCAGAAAGCCGGTAAGACATGTGCTTTTATTGATGCTGAACATGCTCTTGATCCTATCTATGCACAGAAGCTGGG
TGTCGATATTGACCAACTACTGTGTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAAATCGTCGATGCACTCGCACGTT
CTGGTGCCGTTGATCTGATTGTTGTCGATTCTGTAGCGGCATTGACCCCGAAAGCCGAAATTGAAGGTGAAATGGGCGAC
AGCCATATGGGATTGCAAGCTAGGATGTTGTCGCAGGCCATGCGAAAACTGACTGGTAATTTAAAAAATGCAAATTGCAT
GTGTATCTTCATTAACCAAATTCGAATGAAGATTGGTGTAATGTTTGGCAATCCAGAAACGACTACTGGTGGTAATGCCC
TTAAATTCTACGCCTCTGTTCGTCTTGATATTCGCCGTACTGGTGCAATTAAAGATGGTGATGAAGTTGTTGGTAACGAA
ACACGCATCAAGGTTGTTAAAAATAAAATTGCCGCGCCGTTTAAGCAAGCTGAAACACAAATTCTTTATGGTCAAGGCTT
CAACCGTAACGGTGAGCTAATTGATCTAGGTGTTAAGCATAAGCTGGTAGAAAAAGCGGGTGCTTGGTACAGCTATAAAG
GTAATAAGATTGGTCAAGGTAAGGCTAATTCTTGTAAGCACCTAGTTGAAAACCCAGCAATAGCTGAAGAGATTGAAAAA
CTACTGCGTGACATGTTGTTATCACCAGTTGGTGAAGAAGTAGAAAAAGCAGATGTAAAAAAAGATGCAAAAAAAGATGC
AGCTGAAGCACTAAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: Q6LMU2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	87.538	93.466	0.818
recA	Vibrio cholerae O1 biovar El Tor strain E7946	87.538	93.466	0.818
recA	Pseudomonas stutzeri DSM 10701	73.775	98.58	0.727
recA	Acinetobacter baylyi ADP1	73.373	96.023	0.705
recA	Acinetobacter baumannii D1279779	75	93.182	0.699
recA	Glaesserella parasuis strain SC1401	71.166	92.614	0.659
recA	Ralstonia pseudosolanacearum GMI1000	70.336	92.898	0.653
recA	Neisseria gonorrhoeae MS11	68.519	92.045	0.631
recA	Neisseria gonorrhoeae MS11	68.519	92.045	0.631
recA	Neisseria gonorrhoeae strain FA1090	68.519	92.045	0.631
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.832	92.898	0.602
recA	Streptococcus pneumoniae Rx1	60.807	98.58	0.599
recA	Streptococcus pneumoniae TIGR4	60.807	98.58	0.599
recA	Streptococcus pneumoniae D39	60.807	98.58	0.599
recA	Streptococcus pneumoniae R6	60.807	98.58	0.599
recA	Streptococcus mitis NCTC 12261	60.526	97.159	0.588
recA	Streptococcus mitis SK321	60.234	97.159	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	62.928	91.193	0.574
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.843	94.318	0.574
recA	Helicobacter pylori strain NCTC11637	62.069	90.625	0.563
recA	Streptococcus mutans UA159	60.923	92.33	0.562
recA	Streptococcus pyogenes NZ131	60.615	92.33	0.56
recA	Helicobacter pylori 26695	61.755	90.625	0.56
recA	Latilactobacillus sakei subsp. sakei 23K	60.748	91.193	0.554
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.633	92.898	0.554
recA	Lactococcus lactis subsp. cremoris KW2	58.514	91.761	0.537