Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CFI11_RS11205 Genome accession   NZ_CP022303
Coordinates   2242550..2243620 (+) Length   356 a.a.
NCBI ID   WP_130405944.1    Uniprot ID   A0A4V0Z9N2
Organism   Thalassococcus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237550..2248620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI11_RS11190 (CFI11_11235) - 2238159..2239340 (+) 1182 WP_130405938.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CFI11_RS11195 (CFI11_11240) - 2239520..2241715 (+) 2196 WP_371687482.1 ATP-binding protein -
  CFI11_RS11200 (CFI11_11245) - 2241751..2242344 (-) 594 WP_371687474.1 gamma-glutamyl kinase -
  CFI11_RS11205 (CFI11_11250) recA 2242550..2243620 (+) 1071 WP_130405944.1 recombinase RecA Machinery gene
  CFI11_RS11210 (CFI11_11255) alaS 2243793..2246450 (+) 2658 WP_130405946.1 alanine--tRNA ligase -
  CFI11_RS11215 (CFI11_11260) - 2246454..2246741 (+) 288 WP_130405948.1 DUF1330 domain-containing protein -
  CFI11_RS11220 (CFI11_11265) typA 2246783..2248603 (-) 1821 WP_130405950.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38172.61 Da        Isoelectric Point: 4.8006

>NTDB_id=238223 CFI11_RS11205 WP_130405944.1 2242550..2243620(+) (recA) [Thalassococcus sp. S3]
MADLLTMNSKANADKQKALDSALAQIERQFGKGSIMKLGDENAIQEIAASSTGSLGLDIALGIGGLPMGRIVEIYGPESS
GKTTLTLHCVAEQQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALT
PKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGA
LKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGRENAKTFLK
ENDRIALEIEDKIRAAHGLDFDMPPGAASDDDILEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=238223 CFI11_RS11205 WP_130405944.1 2242550..2243620(+) (recA) [Thalassococcus sp. S3]
ATGGCAGATCTTTTGACAATGAACAGCAAAGCAAACGCGGACAAGCAAAAGGCGCTCGACAGCGCGCTGGCACAGATTGA
ACGCCAATTCGGCAAGGGTTCGATCATGAAGCTGGGGGACGAGAACGCGATCCAGGAGATCGCGGCCAGTTCCACCGGCT
CTCTTGGCCTCGACATTGCACTCGGCATCGGCGGGCTGCCGATGGGCCGGATCGTGGAAATCTACGGGCCGGAAAGCTCG
GGCAAGACCACGCTGACCCTGCATTGCGTGGCCGAACAGCAGAAAAAGGGTGGCGTCTGCGCCTTCGTCGACGCTGAACA
TGCGCTTGATCCGCAATATGCGCGTAAGCTGGGCGTGGATCTGGACGAGCTTCTGATCTCGCAACCCGATACGGGCGAGC
AGGCGTTGGAGATCACCGATACGCTGGTGCGCTCGGGCGCTGTTAACATGGTTATCGTGGATTCGGTGGCCGCCCTGACA
CCGAAATCCGAGCTTGAAGGCGATATGGGCGATTCGAGCGTCGGCGTGCAGGCCCGTCTGATGAGCCAGGCGATGCGCAA
GCTCACAGGTTCGATCAGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCTCACCCGAGACGACGACGGGCGGCAACGCGCTGAAATTCTACTCCTCCGTCCGGCTCGACATCCGCCGTATTGGCGCA
TTGAAGGACCGCGACGAGGTTGTGGGCAACGCGACCCGTGTGAAAGTCGTCAAGAACAAGGTGGCACCGCCCTTCAAGCA
GGTGGAATTCGACATCATGTATGGCGAAGGCATTTCCAAAATGGGCGAATTGCTGGATCTGGGCGTGAAGGCTGGGGTGG
TCGAGAAATCGGGCTCCTGGTTCAGCTACGGGGATGAACGGATCGGGCAGGGGCGCGAAAACGCCAAGACCTTCCTGAAG
GAAAACGACCGCATCGCGCTGGAGATCGAGGACAAGATCCGCGCCGCTCACGGGCTCGATTTCGATATGCCGCCGGGTGC
GGCGTCGGATGACGATATCCTGGAAGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0Z9N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

68.437

95.225

0.652
  recA Neisseria gonorrhoeae strain FA1090

68.437

95.225

0.652
  recA Neisseria gonorrhoeae MS11

68.437

95.225

0.652
  recA Glaesserella parasuis strain SC1401

71.875

89.888

0.646
  recA Pseudomonas stutzeri DSM 10701

71.118

90.449

0.643
  recA Ralstonia pseudosolanacearum GMI1000

70.37

91.011

0.64
  recA Vibrio cholerae strain A1552

69.782

90.169

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

90.169

0.629
  recA Acinetobacter baumannii D1279779

69.47

90.169

0.626
  recA Acinetobacter baylyi ADP1

69.159

90.169

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

67.683

92.135

0.624
  recA Helicobacter pylori strain NCTC11637

64.478

94.101

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.371

93.82

0.604
  recA Helicobacter pylori 26695

63.881

94.101

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.244

92.135

0.601
  recA Lactococcus lactis subsp. cremoris KW2

61.357

95.225

0.584
  recA Streptococcus pneumoniae TIGR4

60.294

95.506

0.576
  recA Streptococcus pneumoniae Rx1

60.294

95.506

0.576
  recA Streptococcus pneumoniae D39

60.294

95.506

0.576
  recA Streptococcus pneumoniae R6

60.294

95.506

0.576
  recA Streptococcus mitis NCTC 12261

60.237

94.663

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.778

93.82

0.57
  recA Streptococcus mitis SK321

59.941

94.663

0.567
  recA Streptococcus mutans UA159

59.05

94.663

0.559
  recA Streptococcus pyogenes NZ131

58.333

94.382

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

91.011

0.545

Multiple sequence alignment