Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MYMAC_RS06960 Genome accession   NZ_CP022203
Coordinates   1650183..1651271 (+) Length   362 a.a.
NCBI ID   WP_095957502.1    Uniprot ID   A0A250JQA7
Organism   Corallococcus macrosporus DSM 14697     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1645183..1656271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYMAC_RS06930 (MYMAC_001379) glmS 1645302..1647137 (+) 1836 WP_013935472.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  MYMAC_RS06935 (MYMAC_001380) - 1647223..1647471 (-) 249 WP_095957499.1 hypothetical protein -
  MYMAC_RS06940 (MYMAC_001381) - 1647468..1647965 (-) 498 WP_095957500.1 DUF3106 domain-containing protein -
  MYMAC_RS06945 (MYMAC_001382) - 1647962..1648438 (-) 477 WP_095957501.1 anti-sigma factor family protein -
  MYMAC_RS06950 (MYMAC_001383) - 1648435..1649040 (-) 606 WP_013935468.1 RNA polymerase sigma factor -
  MYMAC_RS06955 (MYMAC_001384) - 1649108..1650070 (+) 963 WP_239989389.1 hypothetical protein -
  MYMAC_RS06960 (MYMAC_001385) recA 1650183..1651271 (+) 1089 WP_095957502.1 recombinase RecA Machinery gene
  MYMAC_RS06965 (MYMAC_001386) - 1651438..1653666 (+) 2229 WP_095957503.1 alkaline phosphatase D family protein -
  MYMAC_RS06970 (MYMAC_001387) - 1653881..1654285 (-) 405 WP_095961502.1 hypothetical protein -
  MYMAC_RS06975 (MYMAC_001388) - 1654436..1654846 (-) 411 WP_095957504.1 hypothetical protein -
  MYMAC_RS06980 (MYMAC_001389) - 1654967..1655518 (+) 552 WP_043709022.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38871.63 Da        Isoelectric Point: 6.8712

>NTDB_id=237514 MYMAC_RS06960 WP_095957502.1 1650183..1651271(+) (recA) [Corallococcus macrosporus DSM 14697]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGSGISREGDLIDLAANENIVEKSGSWFSFNGERIGQGRENVKDYLREHPEIAK
DIEGRVLEKYGIGKTPGAAAAAPEEAAPAEGSEKRGRVKAVK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=237514 MYMAC_RS06960 WP_095957502.1 1650183..1651271(+) (recA) [Corallococcus macrosporus DSM 14697]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGAGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTCGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCGGAAGCGCAGAAGCGTGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCGCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACCACGACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCCCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGACAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCACCGTTCAAGGAAGTCGAGTTCGACATCATGTA
CGGCTCGGGCATCTCCCGTGAGGGCGACCTCATCGATCTCGCCGCCAACGAGAACATCGTGGAGAAGAGCGGGAGCTGGT
TCTCCTTCAACGGCGAGCGCATCGGCCAGGGCCGGGAGAATGTGAAGGACTACCTGCGCGAGCACCCGGAGATTGCGAAG
GACATCGAAGGCCGCGTGCTGGAGAAGTACGGCATCGGCAAGACGCCGGGCGCCGCCGCCGCGGCGCCGGAAGAGGCCGC
GCCCGCCGAGGGCAGCGAGAAGCGCGGCCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250JQA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.598

90.608

0.622
  recA Pseudomonas stutzeri DSM 10701

62.963

96.961

0.61
  recA Acinetobacter baumannii D1279779

63.557

94.751

0.602
  recA Acinetobacter baylyi ADP1

62.428

95.58

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

90.055

0.594
  recA Vibrio cholerae strain A1552

65.951

90.055

0.594
  recA Glaesserella parasuis strain SC1401

64.907

88.95

0.577
  recA Neisseria gonorrhoeae MS11

64.506

89.503

0.577
  recA Neisseria gonorrhoeae MS11

64.506

89.503

0.577
  recA Neisseria gonorrhoeae strain FA1090

64.506

89.503

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

62.538

91.436

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.436

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

89.503

0.566
  recA Helicobacter pylori strain NCTC11637

61.747

91.713

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.385

90.331

0.564
  recA Helicobacter pylori 26695

61.145

91.713

0.561
  recA Streptococcus mitis NCTC 12261

58.382

95.58

0.558
  recA Streptococcus pneumoniae D39

61.027

91.436

0.558
  recA Streptococcus pneumoniae R6

61.027

91.436

0.558
  recA Streptococcus pneumoniae TIGR4

61.027

91.436

0.558
  recA Streptococcus pneumoniae Rx1

61.027

91.436

0.558
  recA Streptococcus mitis SK321

58.092

95.58

0.555
  recA Streptococcus pyogenes NZ131

59.697

91.16

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

91.436

0.541
  recA Streptococcus mutans UA159

58.61

91.436

0.536
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.436

0.53

Multiple sequence alignment