Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CYFUS_RS10710 Genome accession   NZ_CP022098
Coordinates   2580670..2581716 (-) Length   348 a.a.
NCBI ID   WP_095985131.1    Uniprot ID   A0A250IZL9
Organism   Cystobacter fuscus strain DSM 52655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2575670..2586716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYFUS_RS10690 (CYFUS_002119) pssA 2576380..2577222 (+) 843 WP_095985127.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  CYFUS_RS10695 (CYFUS_002120) - 2577287..2578552 (+) 1266 WP_095985128.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CYFUS_RS10700 (CYFUS_002121) - 2578549..2580096 (+) 1548 WP_095985129.1 hypothetical protein -
  CYFUS_RS10705 (CYFUS_002122) - 2580152..2580673 (+) 522 WP_095985130.1 DUF1285 domain-containing protein -
  CYFUS_RS10710 (CYFUS_002123) recA 2580670..2581716 (-) 1047 WP_095985131.1 recombinase RecA Machinery gene
  CYFUS_RS10715 (CYFUS_002124) - 2581883..2583496 (-) 1614 WP_095985132.1 YifB family Mg chelatase-like AAA ATPase -
  CYFUS_RS10720 (CYFUS_002125) - 2583688..2584347 (+) 660 WP_095985133.1 hypothetical protein -
  CYFUS_RS10725 (CYFUS_002126) - 2584248..2584871 (-) 624 WP_095985134.1 DUF2378 family protein -
  CYFUS_RS10730 (CYFUS_002127) - 2584917..2585429 (-) 513 WP_232537493.1 ExbD/TolR family protein -
  CYFUS_RS10735 (CYFUS_002128) - 2585432..2585857 (-) 426 WP_095985135.1 ExbD/TolR family protein -
  CYFUS_RS10740 (CYFUS_002129) - 2585962..2586642 (-) 681 WP_095985136.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36790.15 Da        Isoelectric Point: 7.0574

>NTDB_id=236695 CYFUS_RS10710 WP_095985131.1 2580670..2581716(-) (recA) [Cystobacter fuscus strain DSM 52655]
MNKLTEKLKAVAAAVAAIEKQFGKGAVMPLGGEAREQKVAVIPSGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAQGGVAAFIDAEHALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGCCIIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRLEIRRTSNLKDGESVV
GTRAKVKVVKNKVAPPFQEAEFDVLYGLGIHRAGEVLDLGVQTGLVDKAGSHFSLRGERIGQGRDRATEWLREHPDALES
LARELAGMLPAAAPSTPSAEAEVPTAQA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=236695 CYFUS_RS10710 WP_095985131.1 2580670..2581716(-) (recA) [Cystobacter fuscus strain DSM 52655]
ATGAACAAGCTGACGGAGAAGTTGAAGGCGGTGGCGGCGGCGGTGGCGGCGATCGAGAAGCAGTTCGGCAAGGGGGCGGT
GATGCCGTTGGGGGGCGAGGCGCGCGAGCAGAAGGTGGCGGTGATTCCCTCGGGCTCGGTGGGGCTGGATCGGGCGCTCG
GGGTGGGGGGCTACCCGCGCGGCCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCGGGCAAGACGACGCTCACGCTGCAT
GCCATCGCCCAGGTGCAGGCCCAGGGCGGCGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGACGTCAACTACGCGCG
CAAGCTGGGCGTGCGCGTGGAGGAGCTGCTCATCTCCCAGCCGGACACCGGTGAGCAGGCGCTGGAGATCACCGAGCAGC
TCGTGCGCTCGGGCGCGGTGGATCTCATCGTGGTGGACTCGGTGGCGGCGCTGGTGCCGCGCGCGGAGATCGAGGGGGAG
ATGGGGGATGCGCACATGGGCGTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTCACGGGGGCGGTGAGCCGCTC
GGGCTGCTGCATCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGGTGTTCGGCAACCCGGAGACGACCACGGGAG
GCAACGCGCTGAAGTTCTACTCGTCGGTGCGCCTGGAGATCCGCCGCACGAGCAACCTCAAGGACGGCGAGAGCGTGGTG
GGGACGAGGGCGAAGGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCGGAGTTCGACGTGCTCTACGG
CCTGGGCATCCACCGCGCGGGCGAGGTGCTGGACCTGGGGGTGCAGACGGGGCTGGTGGACAAGGCGGGCAGCCACTTCA
GCCTGCGCGGCGAGCGCATCGGCCAGGGCCGGGACCGGGCCACCGAGTGGCTGCGCGAGCACCCGGACGCGCTGGAGTCT
CTCGCCCGGGAGCTGGCGGGCATGCTCCCCGCCGCGGCCCCCTCCACCCCGAGCGCCGAGGCGGAGGTGCCCACGGCGCA
GGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250IZL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.085

91.667

0.615
  recA Pseudomonas stutzeri DSM 10701

62.908

96.839

0.609
  recA Neisseria gonorrhoeae strain FA1090

63.804

93.678

0.598
  recA Neisseria gonorrhoeae MS11

63.804

93.678

0.598
  recA Neisseria gonorrhoeae MS11

63.804

93.678

0.598
  recA Acinetobacter baylyi ADP1

63.24

92.241

0.583
  recA Vibrio cholerae strain A1552

62.848

92.816

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

92.816

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

64.127

90.517

0.58
  recA Glaesserella parasuis strain SC1401

60.119

96.552

0.58
  recA Acinetobacter baumannii D1279779

62.696

91.667

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

95.402

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.647

97.701

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.377

91.379

0.552
  recA Helicobacter pylori 26695

60.518

88.793

0.537
  recA Helicobacter pylori strain NCTC11637

60.518

88.793

0.537
  recA Streptococcus pyogenes NZ131

57.407

93.103

0.534
  recA Streptococcus mutans UA159

57.812

91.954

0.532
  recA Streptococcus pneumoniae Rx1

56.481

93.103

0.526
  recA Streptococcus pneumoniae D39

56.481

93.103

0.526
  recA Streptococcus pneumoniae R6

56.481

93.103

0.526
  recA Streptococcus pneumoniae TIGR4

56.481

93.103

0.526
  recA Lactococcus lactis subsp. cremoris KW2

55.864

93.103

0.52
  recA Streptococcus mitis NCTC 12261

55.556

93.103

0.517
  recA Streptococcus mitis SK321

55.556

93.103

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.372

89.655

0.514

Multiple sequence alignment