Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CYFUS_RS10260 Genome accession   NZ_CP022098
Coordinates   2474016..2475113 (+) Length   365 a.a.
NCBI ID   WP_095985052.1    Uniprot ID   -
Organism   Cystobacter fuscus strain DSM 52655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2469016..2480113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYFUS_RS10245 (CYFUS_002031) - 2469209..2470240 (-) 1032 WP_095991922.1 ribonucleotide-diphosphate reductase subunit beta -
  CYFUS_RS10250 (CYFUS_002032) - 2470267..2472657 (-) 2391 WP_157758375.1 ribonucleoside-diphosphate reductase subunit alpha -
  CYFUS_RS10255 (CYFUS_002033) - 2473140..2473907 (+) 768 WP_095985051.1 hypothetical protein -
  CYFUS_RS10260 (CYFUS_002034) recA 2474016..2475113 (+) 1098 WP_095985052.1 recombinase RecA Machinery gene
  CYFUS_RS10265 (CYFUS_002035) - 2475365..2476735 (+) 1371 WP_095985053.1 hypothetical protein -
  CYFUS_RS10270 (CYFUS_002036) - 2476764..2478017 (-) 1254 WP_232537486.1 peptidase C39 family protein -
  CYFUS_RS10275 (CYFUS_002037) - 2478060..2479457 (-) 1398 WP_095985055.1 M20/M25/M40 family metallo-hydrolase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39367.14 Da        Isoelectric Point: 7.3833

>NTDB_id=236694 CYFUS_RS10260 WP_095985052.1 2474016..2475113(+) (recA) [Cystobacter fuscus strain DSM 52655]
MAVNPEKEKAIELAMSAVERQFGKGSIMRLGNEEPLVRDVQAISTGSVSLDIALGVGGVPKGRIVEIYGPESSGKTTLCL
HVVAEAQKRGGVAGYIDAEHALDIGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGSGISREGDLIDLASTDNIIEKSGSWFSFKGERIGQGRENAKDYLRDHPEVMK
EVERQVYEKYGIGKPAVAAVPTPPADGEPPAEGHGEKRQRVKAVK

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=236694 CYFUS_RS10260 WP_095985052.1 2474016..2475113(+) (recA) [Cystobacter fuscus strain DSM 52655]
ATGGCCGTGAATCCGGAGAAGGAGAAGGCGATCGAGTTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGTAAGGGGTCCAT
CATGCGGCTCGGTAACGAGGAGCCGCTGGTGAGGGATGTTCAGGCCATTTCGACGGGAAGCGTCTCGCTCGACATCGCCT
TGGGCGTCGGAGGCGTGCCCAAGGGCCGTATCGTGGAGATCTACGGGCCGGAGTCCTCGGGTAAGACGACGTTGTGCCTC
CATGTGGTGGCCGAGGCGCAGAAGCGCGGCGGCGTGGCGGGCTACATCGACGCCGAGCACGCGCTGGACATCGGCTACGC
GCGCAAGTTGGGCGTGCGCACGGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAGATCGCCGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTCGAGGGC
GAGATGGGCGATGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCAGCAA
GAGCCAGACGTGCGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACGACGACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCGTGGGCGCCATCAAGAATGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTGGCGCCTCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCTCGGGCATCTCGAGGGAGGGCGACCTCATCGACCTGGCGTCGACGGACAACATCATCGAGAAGAGCGGTAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGCGAGAACGCCAAGGACTACCTGCGTGACCATCCCGAGGTCATGAAG
GAAGTGGAGCGGCAGGTGTACGAGAAGTACGGCATTGGCAAGCCGGCCGTGGCGGCGGTGCCGACGCCTCCGGCCGATGG
CGAGCCGCCGGCCGAGGGCCACGGCGAGAAGCGCCAGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

64.985

92.329

0.6
  recA Ralstonia pseudosolanacearum GMI1000

69.206

86.301

0.597
  recA Glaesserella parasuis strain SC1401

60.955

97.534

0.595
  recA Pseudomonas stutzeri DSM 10701

63.717

92.877

0.592
  recA Neisseria gonorrhoeae MS11

60.969

96.164

0.586
  recA Neisseria gonorrhoeae strain FA1090

60.969

96.164

0.586
  recA Neisseria gonorrhoeae MS11

60.969

96.164

0.586
  recA Vibrio cholerae strain A1552

65.337

89.315

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

89.315

0.584
  recA Streptococcus mitis SK321

58.402

99.452

0.581
  recA Streptococcus mitis NCTC 12261

58.127

99.452

0.578
  recA Acinetobacter baylyi ADP1

64.22

89.589

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Streptococcus pneumoniae D39

62.236

90.685

0.564
  recA Streptococcus pneumoniae R6

62.236

90.685

0.564
  recA Streptococcus pneumoniae TIGR4

62.236

90.685

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

90.685

0.564
  recA Streptococcus pneumoniae Rx1

62.236

90.685

0.564
  recA Helicobacter pylori strain NCTC11637

59.71

94.521

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.665

88.219

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.747

90.959

0.562
  recA Helicobacter pylori 26695

59.13

94.521

0.559
  recA Streptococcus pyogenes NZ131

61.212

90.411

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.843

90.959

0.553
  recA Streptococcus mutans UA159

59.517

90.685

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.61

90.685

0.532

Multiple sequence alignment