Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CEP64_RS21080 Genome accession   NZ_CP022046
Coordinates   1395920..1396933 (-) Length   337 a.a.
NCBI ID   WP_048542786.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain FDAARGOS_285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1390920..1401933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP64_RS21065 (CEP64_07010) - 1391189..1392685 (+) 1497 WP_058591408.1 glycosyltransferase family 2 protein -
  CEP64_RS21070 (CEP64_07015) - 1392732..1393967 (-) 1236 WP_058591407.1 Fic family protein -
  CEP64_RS21075 (CEP64_07020) rny 1394143..1395702 (-) 1560 WP_048542634.1 ribonuclease Y -
  CEP64_RS21080 (CEP64_07025) recA 1395920..1396933 (-) 1014 WP_048542786.1 recombinase RecA Machinery gene
  CEP64_RS21085 (CEP64_07030) - 1397145..1398293 (-) 1149 WP_058591406.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CEP64_RS21090 (CEP64_07035) pgsA 1398351..1398932 (-) 582 WP_037587820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CEP64_RS21095 (CEP64_07040) - 1398997..1399392 (-) 396 WP_048542627.1 helix-turn-helix domain-containing protein -
  CEP64_RS21100 (CEP64_07045) - 1399413..1400228 (-) 816 WP_025905363.1 YmfK family protein -
  CEP64_RS21105 (CEP64_07050) ymfI 1400245..1400949 (-) 705 WP_058591405.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36518.42 Da        Isoelectric Point: 5.0935

>NTDB_id=236159 CEP64_RS21080 WP_048542786.1 1395920..1396933(-) (recA) [Mammaliicoccus sciuri strain FDAARGOS_285]
MEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEAQRQGGVAAFIDAE
HALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALR
KLSGAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKIKVVKNKVAPPFR
VAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDGILRDQLGFNGKKKEE
AKKEDKPNEPEQETLLD

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=236159 CEP64_RS21080 WP_048542786.1 1395920..1396933(-) (recA) [Mammaliicoccus sciuri strain FDAARGOS_285]
ATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCTAGGGGATAATACAAGCAGAGAAGTATCAGCAGTTTCTAGTGG
CTCAATCACACTTGATAAAGCATTAGGTGTTGGTGGTTACCCTAAAGGACGTATCATTGAAATATATGGTCCAGAAAGTT
CTGGTAAAACAACAGTAGCTTTACACGCTATCGCTGAAGCGCAAAGACAAGGTGGCGTAGCTGCTTTTATTGATGCTGAG
CACGCACTAGATCCTGTTTATGCTAAAAACTTAGGCGTAGATATTGATAACCTATATTTATCACAACCTGACCACGGTGA
ACAAGGTTTAGAGATTGCAGAAGCATTTGTTCGTAGTGGTGCAGTTGATATTGTTATTGTCGACTCAGTTGCTGCATTAA
CACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACACACGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGT
AAATTATCAGGTGCTATTTCTAAATCAAATACAACAGCTATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTT
CGGTAATCCTGAAGTAACACCAGGTGGACGTGCGTTGAAGTTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAAC
AATTGAAACAAGGTCAAGAAGTAGTTGGTAACCGAACTAAAATTAAAGTTGTTAAAAACAAAGTTGCGCCTCCATTCAGA
GTAGCAGAAGTTGATATTATGTACGGTGAAGGTATTTCACGTGAAGGTGAATTAATCGACTTAGCAGTTGAATTTGATAT
TGTAGATAAATCAGGTGCTTGGTATTCATATAACGGAGAACGTATGGGTCAAGGTAAAGAAAACGTTAAGACTTACTTAA
AAGAAAATCCAGCTATTATTGAAGAAATTGATGGAATCTTAAGAGATCAATTAGGCTTTAACGGTAAGAAGAAAGAAGAA
GCTAAAAAAGAAGATAAACCTAATGAACCTGAACAAGAAACTTTACTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.389

93.175

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

68.843

100

0.688
  recA Streptococcus mitis NCTC 12261

64.841

100

0.668
  recA Streptococcus mutans UA159

65.385

100

0.656
  recA Streptococcus pneumoniae D39

65.089

100

0.653
  recA Streptococcus pneumoniae TIGR4

65.089

100

0.653
  recA Streptococcus pneumoniae R6

65.089

100

0.653
  recA Streptococcus pneumoniae Rx1

65.089

100

0.653
  recA Streptococcus mitis SK321

65.758

97.923

0.644
  recA Acinetobacter baumannii D1279779

66.055

97.033

0.641
  recA Streptococcus pyogenes NZ131

68.354

93.769

0.641
  recA Acinetobacter baylyi ADP1

64.653

98.22

0.635
  recA Neisseria gonorrhoeae MS11

63.964

98.813

0.632
  recA Neisseria gonorrhoeae strain FA1090

63.964

98.813

0.632
  recA Neisseria gonorrhoeae MS11

63.964

98.813

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.562

94.065

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.456

93.769

0.623
  recA Helicobacter pylori strain NCTC11637

62.874

99.11

0.623
  recA Helicobacter pylori 26695

62.575

99.11

0.62
  recA Vibrio cholerae strain A1552

66.238

92.285

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.238

92.285

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.65

93.175

0.602
  recA Glaesserella parasuis strain SC1401

60.961

98.813

0.602
  recA Pseudomonas stutzeri DSM 10701

64.63

92.285

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.83

94.065

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.171

90.208

0.561

Multiple sequence alignment