Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TRNA_RS31000 Genome accession   NC_006270
Coordinates   1877682..1878728 (+) Length   348 a.a.
NCBI ID   WP_003181926.1    Uniprot ID   P62211
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872682..1883728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS30975 (BL01198) - 1873380..1873637 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  TRNA_RS30980 (BL01197) - 1873885..1874676 (+) 792 WP_003181917.1 YmfK family protein -
  TRNA_RS30985 (BL01196) - 1874694..1875596 (+) 903 WP_003181919.1 helix-turn-helix domain-containing protein -
  TRNA_RS30990 (BL01195) pgsA 1875663..1876244 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  TRNA_RS30995 (BL05163) cinA 1876264..1877514 (+) 1251 WP_003181923.1 competence/damage-inducible protein A Machinery gene
  TRNA_RS31000 (BL05164) recA 1877682..1878728 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  TRNA_RS31005 (BL03655) rny 1879069..1880628 (+) 1560 WP_003181928.1 ribonuclease Y -
  TRNA_RS31010 (BL03656) - 1880715..1881512 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  TRNA_RS31015 (BL03654) spoVS 1881714..1881974 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  TRNA_RS31020 (BL05165) - 1882079..1882999 (+) 921 WP_003181957.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37734.86 Da        Isoelectric Point: 4.7661

>NTDB_id=23571 TRNA_RS31000 WP_003181926.1 1877682..1878728(+) (recA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGAAPAQEDEAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=23571 TRNA_RS31000 WP_003181926.1 1877682..1878728(+) (recA) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
CGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGATGCGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAAGCGGCGTTCATCGACGCCGAACACGCGCTTGATCCCGTCTATGCACAAAAGCTGGGCGT
CAACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCGCTCGAAATCGCTGAAGCCCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCTGTAGCAGCGCTTGTGCCGAAAGCTGAAATCGAAGGAGATATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAGGCGCTTCGCAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATCTTTATCAACCAGATTCGTGAAAAAGTCGGTGTCATGTTTGGAAATCCTGAGACGACGCCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACGACGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCACCTCCATTCCGGACAGCCGAAGTGGACATTATGTACGGGGAAGGAATTTC
AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTTCAAAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AACGCCTTGGACAAGGCCGTGAAAACGCCAAACAGTTCCTGAAAGAAAACAAGGATATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGATACTGGAGGCGCTGCTCCTGCACAGGAAGACGAGGCCCAAGCTCAGGAAGAACTCGA
GTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P62211

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.677

95.115

0.92
  recA Latilactobacillus sakei subsp. sakei 23K

74.769

93.391

0.698
  recA Streptococcus mitis NCTC 12261

68.023

98.851

0.672
  recA Streptococcus pneumoniae D39

67.147

99.713

0.67
  recA Streptococcus pneumoniae Rx1

67.147

99.713

0.67
  recA Streptococcus pneumoniae R6

67.147

99.713

0.67
  recA Streptococcus pneumoniae TIGR4

67.147

99.713

0.67
  recA Streptococcus mitis SK321

67.93

98.563

0.67
  recA Streptococcus mutans UA159

68.997

94.54

0.652
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.828

0.632
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.741

93.103

0.612
  recA Acinetobacter baumannii D1279779

60.983

99.425

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.701

0.606
  recA Helicobacter pylori 26695

64.615

93.391

0.603
  recA Helicobacter pylori strain NCTC11637

64.615

93.391

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.966

0.595
  recA Pseudomonas stutzeri DSM 10701

60.526

98.276

0.595
  recA Acinetobacter baylyi ADP1

60.174

98.851

0.595
  recA Vibrio cholerae strain A1552

64.174

92.241

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.241

0.592
  recA Glaesserella parasuis strain SC1401

59.593

98.851

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment