Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   S100194_RS03090 Genome accession   NZ_CP021927
Coordinates   556250..557308 (+) Length   352 a.a.
NCBI ID   WP_088355948.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain SRCM100194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551250..562308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100194_RS03065 (S100194_00614) yfmH 551286..552578 (+) 1293 WP_002833722.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  S100194_RS03070 (S100194_00615) ymfI 552575..553300 (+) 726 WP_011673588.1 elongation factor P 5-aminopentanone reductase -
  S100194_RS03075 (S100194_00616) - 553346..554215 (+) 870 WP_011673587.1 helix-turn-helix domain-containing protein -
  S100194_RS03080 (S100194_00617) pgsA 554228..554809 (+) 582 WP_002833726.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  S100194_RS03085 (S100194_00618) - 554919..556160 (+) 1242 WP_055126343.1 competence/damage-inducible protein A -
  S100194_RS03090 (S100194_00619) recA 556250..557308 (+) 1059 WP_088355948.1 recombinase RecA Machinery gene
  S100194_RS03095 (S100194_00620) rny 557477..559036 (+) 1560 WP_023440572.1 ribonuclease Y -
  S100194_RS03100 (S100194_00621) mutS 559150..561771 (+) 2622 WP_088355949.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37683.86 Da        Isoelectric Point: 5.3503

>NTDB_id=235018 S100194_RS03090 WP_088355948.1 556250..557308(+) (recA) [Pediococcus pentosaceus strain SRCM100194]
MADERQEALNKALKKIEKNFGKGSIMRMGDAVDTQISTIPSGSLALDDALGVGGFPKGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENAMDPAYATNLGVDIDSLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGD
AHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGADVIGNR
VRIKVVKNKVAPPFKKAEVDIMYGHGISQTGEMVDMAVEKDLVGKSGSWYSYGDERIGQGRENAKKYIDEHPDVRAEILG
KVREAYGMVADPTSEVKKESSKKSSTDDSDLA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=235018 S100194_RS03090 WP_088355948.1 556250..557308(+) (recA) [Pediococcus pentosaceus strain SRCM100194]
TTGGCAGACGAAAGACAAGAAGCTTTAAATAAAGCACTTAAAAAAATTGAAAAAAACTTTGGTAAAGGATCTATTATGCG
AATGGGGGATGCGGTTGATACGCAAATTTCAACGATTCCCAGTGGTTCTTTAGCATTAGACGATGCACTAGGAGTTGGCG
GTTTTCCTAAGGGAAGAATCGTCGAAATTTATGGGCCTGAAAGTTCTGGTAAGACAACTGTAGCTTTACATGCAGTTGCT
GAAGTGCAAAAACGTGGGGGAACTGCTGCATATATTGATGCTGAAAACGCGATGGATCCTGCATATGCAACTAATTTGGG
CGTTGATATCGATTCACTCCTACTTTCACAACCAGACACTGGTGAAGAAGGATTAGCTATTGCCGATGCTTTGGTATCAA
GTGGTGCTATTGACTTGGTCGTTATTGATTCCGTTGCAGCCTTAGTTCCACGTGCTGAAATTGATGGAGAGATGGGGGAT
GCTCATGTTGGCCTCCAAGCTCGGATGATGTCACAAGCACTTCGTAAATTATCTGGTTCGATTAACAAAACTAAGACGAT
TGCGTTATTCATTAACCAAATACGTGAAAAAGTCGGAATTATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGGGCTT
TAAAATTCTATGCAACAATCCGTTTAGAAGTACGCCGTGCAGAACAAATTAAAGATGGTGCCGACGTTATTGGTAACCGT
GTTCGTATTAAAGTGGTAAAAAACAAGGTTGCTCCTCCATTCAAAAAGGCTGAAGTCGATATTATGTATGGTCATGGAAT
TTCGCAAACTGGTGAAATGGTTGATATGGCTGTTGAAAAAGATTTGGTTGGTAAGAGTGGTTCATGGTATTCATACGGAG
ACGAACGCATTGGACAGGGTCGTGAGAATGCTAAGAAATACATTGATGAACATCCAGACGTTCGTGCAGAAATTCTTGGT
AAAGTTCGTGAAGCGTATGGTATGGTAGCTGATCCTACGAGTGAAGTTAAAAAAGAAAGTTCCAAAAAATCTTCAACTGA
TGATTCAGATTTAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.737

94.886

0.776
  recA Bacillus subtilis subsp. subtilis str. 168

71.951

93.182

0.67
  recA Streptococcus pneumoniae D39

66.762

99.148

0.662
  recA Streptococcus pneumoniae R6

66.762

99.148

0.662
  recA Streptococcus pneumoniae TIGR4

66.762

99.148

0.662
  recA Streptococcus pneumoniae Rx1

66.762

99.148

0.662
  recA Streptococcus mitis SK321

67.449

96.875

0.653
  recA Streptococcus mutans UA159

65.341

100

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.249

95.739

0.653
  recA Streptococcus mitis NCTC 12261

66.472

97.443

0.648
  recA Streptococcus pyogenes NZ131

67.976

94.034

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.534

100

0.565
  recA Vibrio cholerae strain A1552

56.534

100

0.565
  recA Neisseria gonorrhoeae MS11

58.065

96.875

0.563
  recA Neisseria gonorrhoeae MS11

58.065

96.875

0.563
  recA Neisseria gonorrhoeae strain FA1090

58.065

96.875

0.563
  recA Ralstonia pseudosolanacearum GMI1000

62.939

88.92

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

93.182

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

92.33

0.545
  recA Acinetobacter baylyi ADP1

58.951

92.045

0.543
  recA Pseudomonas stutzeri DSM 10701

58.824

91.761

0.54
  recA Glaesserella parasuis strain SC1401

54.155

99.148

0.537
  recA Acinetobacter baumannii D1279779

58.333

92.045

0.537
  recA Helicobacter pylori strain NCTC11637

57.975

92.614

0.537
  recA Helicobacter pylori 26695

57.975

92.614

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

93.466

0.534

Multiple sequence alignment