Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   S101392_RS09085 Genome accession   NZ_CP021921
Coordinates   1741138..1742184 (+) Length   348 a.a.
NCBI ID   WP_014664021.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736138..1747184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS09055 (S101392_01796) efpI 1736146..1736874 (+) 729 WP_015715897.1 EF-P-5 aminopentanone reductase -
  S101392_RS09060 (S101392_01797) ymfJ 1736955..1737212 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  S101392_RS09065 (S101392_01798) - 1737342..1738133 (+) 792 WP_003220998.1 YmfK family protein -
  S101392_RS09070 (S101392_01799) rodZ 1738200..1739066 (+) 867 WP_250621313.1 cell shape determination protein RodZ -
  S101392_RS09075 (S101392_01800) pgsA 1739116..1739697 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  S101392_RS09080 (S101392_01801) cinA 1739715..1740965 (+) 1251 WP_088325887.1 competence/damage-inducible protein A Machinery gene
  S101392_RS09085 (S101392_01802) recA 1741138..1742184 (+) 1047 WP_014664021.1 recombinase RecA Machinery gene
  S101392_RS09090 (S101392_01803) pbpX 1742352..1743527 (+) 1176 WP_088325889.1 serine hydrolase domain-containing protein -
  S101392_RS09095 (S101392_01804) rny 1743803..1745365 (+) 1563 WP_003221010.1 ribonuclease Y -
  S101392_RS09100 (S101392_01805) ymdB 1745434..1746228 (+) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  S101392_RS09105 (S101392_01806) spoVS 1746428..1746688 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38087.26 Da        Isoelectric Point: 4.7315

>NTDB_id=234960 S101392_RS09085 WP_014664021.1 1741138..1742184(+) (recA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQVEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=234960 S101392_RS09085 WP_014664021.1 1741138..1742184(+) (recA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGTTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.713

100

0.997
  recA Latilactobacillus sakei subsp. sakei 23K

72.727

97.989

0.713
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus mutans UA159

65.903

100

0.661
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

63.081

98.851

0.624
  recA Helicobacter pylori strain NCTC11637

63.081

98.851

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.832

93.966

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60.29

99.138

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

61.243

97.126

0.595
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment