Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDV25_RS00470 Genome accession   NZ_CP021886
Coordinates   88070..89101 (-) Length   343 a.a.
NCBI ID   WP_108910303.1    Uniprot ID   A0A2U8FB07
Organism   Helicobacter apodemus strain SCJK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 83070..94101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDV25_RS00440 (CDV25_00440) waaF 83211..84236 (-) 1026 WP_108910297.1 lipopolysaccharide heptosyltransferase II -
  CDV25_RS00445 (CDV25_00445) - 84233..85327 (-) 1095 WP_108910298.1 glycosyltransferase family 4 protein -
  CDV25_RS00450 (CDV25_00450) - 85324..85815 (-) 492 WP_108910299.1 shikimate kinase -
  CDV25_RS00455 (CDV25_00455) - 85802..86518 (-) 717 WP_108910300.1 AMIN domain-containing protein -
  CDV25_RS00460 (CDV25_00460) - 86515..86760 (-) 246 WP_108910301.1 hypothetical protein -
  CDV25_RS00465 (CDV25_00465) eno 86757..88037 (-) 1281 WP_108910302.1 phosphopyruvate hydratase -
  CDV25_RS00470 (CDV25_00470) recA 88070..89101 (-) 1032 WP_108910303.1 recombinase RecA Machinery gene
  CDV25_RS00475 (CDV25_00475) - 89276..90562 (+) 1287 WP_108910304.1 S41 family peptidase -
  CDV25_RS00480 (CDV25_00480) purC 90575..91297 (+) 723 WP_108910305.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  CDV25_RS00485 (CDV25_00485) purS 91294..91530 (+) 237 WP_108910306.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  CDV25_RS00490 (CDV25_00490) purQ 91532..92191 (+) 660 WP_108910307.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  CDV25_RS00495 (CDV25_00495) - 92188..93489 (+) 1302 WP_108910308.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37054.53 Da        Isoelectric Point: 5.0688

>NTDB_id=234406 CDV25_RS00470 WP_108910303.1 88070..89101(-) (recA) [Helicobacter apodemus strain SCJK1]
MALDESKQKAIELAIKQIDKAFGKGALIRLGDKPVEKIDCISTGSLGLDIALGIGGIPKGRIIEVYGPESSGKTTLALQV
VAECQKNGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFGEQALEILETLTRSGGVDLIIIDSVAALTPKSEIEGDM
GDQHLGLQARLMSQALRKVTGIIHKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGEQNI
GNRVKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYGDKKLGQGKENAKIFLKENPEISQE
IEEKIKSSISISDDLSNTSEDDE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=234406 CDV25_RS00470 WP_108910303.1 88070..89101(-) (recA) [Helicobacter apodemus strain SCJK1]
ATGGCATTAGATGAAAGTAAGCAAAAAGCCATAGAACTTGCCATCAAGCAAATTGATAAAGCTTTTGGCAAAGGTGCTTT
AATTAGACTTGGGGATAAACCCGTTGAAAAAATTGATTGTATTAGCACAGGTTCTTTAGGGTTAGATATTGCACTTGGTA
TTGGAGGCATCCCAAAGGGGAGAATCATTGAAGTTTATGGTCCTGAAAGCTCTGGTAAAACTACACTCGCATTACAAGTT
GTTGCAGAATGTCAAAAAAATGGGGGAATTTGTGCTTTTATAGATGCTGAACACGCTTTAGATGTTACCTATGCCAAACG
ATTAGGCGTAGATGTCGAAAACCTCCTTGTATCACAACCTGATTTTGGGGAACAAGCTTTAGAGATATTAGAAACACTTA
CAAGAAGTGGTGGCGTGGATTTAATCATTATTGATTCTGTTGCAGCACTTACCCCAAAAAGTGAAATTGAAGGGGATATG
GGAGATCAACATTTGGGACTTCAAGCAAGATTAATGAGTCAAGCATTAAGAAAAGTTACAGGTATTATCCATAAAATGAA
TACCACCGTTATATTCATCAACCAAATTCGTATGAAAATTGGTGTAATGGGATATGGAAGTCCAGAGACAACGACAGGTG
GTAATGCTTTAAAATTTTATGCAAGCGTTAGAATTGATGTAAGAAGAATTGCAAGTTTAAAACAAGGAGAACAAAATATA
GGAAATCGCGTTAAAGCAAAAGTTGTAAAAAACAAAGTTGCACCTCCTTTTAGAGGAGCAGAATTCGACATTATGTTTGG
AGAGGGTATTAGCAAAGAGGGAGAATTAATAGATTATGGAGTAAAGCTTGATATTGTCGATAAAAGTGGTGCTTGGTTTA
GCTATGGAGATAAAAAACTAGGGCAAGGCAAAGAAAATGCTAAGATATTCTTAAAAGAAAATCCAGAAATCTCTCAAGAA
ATAGAGGAAAAAATTAAATCCTCTATTTCTATCTCTGATGATTTATCTAATACTTCAGAAGATGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FB07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

82.687

97.668

0.808
  recA Helicobacter pylori strain NCTC11637

82.388

97.668

0.805
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.833

99.417

0.764
  recA Neisseria gonorrhoeae strain FA1090

64.809

99.417

0.644
  recA Neisseria gonorrhoeae MS11

64.809

99.417

0.644
  recA Neisseria gonorrhoeae MS11

64.809

99.417

0.644
  recA Acinetobacter baylyi ADP1

63.265

100

0.633
  recA Pseudomonas stutzeri DSM 10701

64.848

96.21

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

64.634

95.627

0.618
  recA Acinetobacter baumannii D1279779

64.526

95.335

0.615
  recA Ralstonia pseudosolanacearum GMI1000

66.984

91.837

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.763

97.085

0.609
  recA Glaesserella parasuis strain SC1401

63.19

95.044

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.963

94.461

0.595
  recA Vibrio cholerae strain A1552

62.963

94.461

0.595
  recA Streptococcus pneumoniae R6

58.651

99.417

0.583
  recA Streptococcus pneumoniae Rx1

58.651

99.417

0.583
  recA Streptococcus pneumoniae D39

58.651

99.417

0.583
  recA Streptococcus pneumoniae TIGR4

58.651

99.417

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

56.772

100

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.337

96.793

0.574
  recA Streptococcus mitis NCTC 12261

59.215

96.501

0.571
  recA Streptococcus mitis SK321

58.912

96.501

0.569
  recA Streptococcus mutans UA159

57.059

99.125

0.566
  recA Streptococcus pyogenes NZ131

59.202

95.044

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

94.461

0.557

Multiple sequence alignment