Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCS77_RS08440 Genome accession   NZ_CP021642
Coordinates   1693625..1694722 (+) Length   365 a.a.
NCBI ID   WP_021085361.1    Uniprot ID   A0A0M4TCP9
Organism   Campylobacter concisus strain P2CDO4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688625..1699722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS77_RS08405 (CCS77_1688) modA 1688657..1689355 (-) 699 WP_107917123.1 molybdate ABC transporter substrate-binding protein -
  CCS77_RS08410 (CCS77_1689) - 1689483..1690571 (+) 1089 WP_107917124.1 nicotinate phosphoribosyltransferase -
  CCS77_RS08415 (CCS77_1690) - 1690580..1691077 (+) 498 WP_107917125.1 chemotaxis protein -
  CCS77_RS08420 (CCS77_1691) - 1691133..1692005 (+) 873 WP_103610668.1 menaquinone biosynthesis family protein -
  CCS77_RS08425 (CCS77_1692) fliQ 1692002..1692271 (+) 270 WP_236635313.1 flagellar biosynthesis protein FliQ -
  CCS77_RS08430 (CCS77_1693) - 1692268..1693065 (+) 798 WP_107917127.1 UDP-N-acetylmuramate dehydrogenase -
  CCS77_RS08435 (CCS77_1694) - 1693074..1693562 (+) 489 WP_107917128.1 addiction module antitoxin -
  CCS77_RS08440 (CCS77_1695) recA 1693625..1694722 (+) 1098 WP_021085361.1 recombinase RecA Machinery gene
  CCS77_RS08445 (CCS77_1696) eno 1694722..1695972 (+) 1251 WP_107917129.1 phosphopyruvate hydratase -
  CCS77_RS10780 - 1696077..1696259 (+) 183 WP_180385140.1 hypothetical protein -
  CCS77_RS08455 (CCS77_1698) - 1696265..1697125 (+) 861 WP_107917130.1 AMIN domain-containing protein -
  CCS77_RS10680 - 1697180..1697308 (+) 129 Protein_1641 integrase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39209.83 Da        Isoelectric Point: 5.0163

>NTDB_id=232154 CCS77_RS08440 WP_021085361.1 1693625..1694722(+) (recA) [Campylobacter concisus strain P2CDO4]
MAKEKDSDKKIAIPESEADKKKALELALKQIDKAFGKGTLLRLGDKEVEAIESIPTGSLGLDLALGIGGVPKGRIIEIYG
PESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFGEQALEIVETLARSGAVDLIVVDSV
AALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNDEPIGNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPEISDEIVAAIKGSMGIDHLISSGAKDEDDDTNEAGDE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=232154 CCS77_RS08440 WP_021085361.1 1693625..1694722(+) (recA) [Campylobacter concisus strain P2CDO4]
ATGGCAAAAGAAAAAGATAGTGACAAAAAGATAGCTATCCCAGAGAGCGAAGCGGACAAGAAAAAGGCGCTTGAGCTTGC
GCTAAAGCAGATCGATAAAGCTTTTGGCAAAGGCACGCTTTTAAGACTTGGCGACAAAGAGGTTGAGGCCATCGAGTCGA
TACCGACTGGCTCGCTAGGACTTGATCTGGCTCTTGGCATAGGCGGCGTTCCAAAAGGCAGGATCATCGAGATCTATGGA
CCAGAGAGCTCTGGTAAGACCACGCTCACACTTCACATCATCGCTGAAGCGCAAAAAGCTGGCGGAATTTGTGCATTTGT
CGACGCAGAGCACGCACTAGACGTAAAATACGCTTCAAATTTAGGCGTAAATACCGACAACCTTTACGTCTCTCAGCCAG
ACTTTGGCGAGCAGGCACTTGAGATCGTTGAGACGCTTGCAAGAAGTGGCGCAGTCGATCTTATCGTAGTTGATAGCGTC
GCTGCCCTTACTCCAAAGAGCGAGATAGACGGCGATATGGGCGATCAGCACGTTGGCTTGCAAGCAAGGCTTATGAGTCA
GGCGCTTAGAAAGCTAACTGGAATTTTAAGCAAGATGAAGACAACTGTTATCTTCATCAACCAAATTCGTATGAAGATCG
GTATGATGGGATATGGCACGCCAGAGACCACAACTGGCGGTAATGCGCTTAAATTTTACTCATCTGTAAGAATAGACGTT
AGAAAGATAGCCACACTTAAACAAAACGACGAGCCTATCGGTAACCGCACAAAAGCAAAAGTCGTTAAAAACAAGGTCGC
GCCTCCATTTAAAGTGGCTGAATTTGACATCATGTTTGGCGAGGGTGTGAGCAAAGAGGGCGAGATCATCGACTATGGCG
TAAAGCTCGACATCATCGACAAATCAGGCGCGTGGTTTAGCTACAAGGCCGAAAAACTAGGTCAAGGCAGAGAAAACGCC
AAAGCCTATCTAAAAGAGCACCCAGAAATTTCTGACGAGATAGTAGCGGCGATCAAAGGCTCAATGGGTATAGACCACCT
CATAAGCAGCGGCGCAAAAGACGAAGACGACGACACAAACGAAGCAGGAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4TCP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.941

93.151

0.773
  recA Helicobacter pylori 26695

80.308

89.041

0.715
  recA Helicobacter pylori strain NCTC11637

80

89.041

0.712
  recA Glaesserella parasuis strain SC1401

60.218

100

0.605
  recA Neisseria gonorrhoeae MS11

65

93.151

0.605
  recA Neisseria gonorrhoeae strain FA1090

65

93.151

0.605
  recA Neisseria gonorrhoeae MS11

65

93.151

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.584

89.589

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

90.137

0.589
  recA Acinetobacter baylyi ADP1

62.941

93.151

0.586
  recA Pseudomonas stutzeri DSM 10701

65.123

88.767

0.578
  recA Acinetobacter baumannii D1279779

62.763

91.233

0.573
  recA Streptococcus pneumoniae TIGR4

61.934

90.685

0.562
  recA Streptococcus pneumoniae Rx1

61.934

90.685

0.562
  recA Streptococcus pneumoniae D39

61.934

90.685

0.562
  recA Streptococcus pneumoniae R6

61.934

90.685

0.562
  recA Streptococcus mitis NCTC 12261

61.631

90.685

0.559
  recA Streptococcus pyogenes NZ131

61.702

90.137

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.856

85.753

0.556
  recA Vibrio cholerae strain A1552

64.856

85.753

0.556
  recA Streptococcus mitis SK321

61.027

90.685

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.118

93.151

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60.423

90.685

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.309

93.973

0.548
  recA Ralstonia pseudosolanacearum GMI1000

63.091

86.849

0.548
  recA Streptococcus mutans UA159

60.303

90.411

0.545

Multiple sequence alignment