Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AFA_RS11005 Genome accession   NZ_CP021641
Coordinates   2383500..2384582 (-) Length   360 a.a.
NCBI ID   WP_230017900.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain JQ135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2378500..2389582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFA_RS10985 (AFA_11000) - 2378529..2379107 (-) 579 WP_230017903.1 DUF2889 domain-containing protein -
  AFA_RS10990 (AFA_11005) metE 2379379..2381673 (-) 2295 WP_094196962.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AFA_RS10995 (AFA_11010) - 2381791..2382711 (+) 921 WP_094196963.1 LysR family transcriptional regulator -
  AFA_RS11000 (AFA_11015) recX 2382868..2383416 (-) 549 WP_257790051.1 recombination regulator RecX -
  AFA_RS11005 (AFA_11020) recA 2383500..2384582 (-) 1083 WP_230017900.1 recombinase RecA Machinery gene
  AFA_RS11010 (AFA_11025) - 2384789..2385478 (+) 690 WP_094196964.1 response regulator transcription factor -
  AFA_RS11015 (AFA_11030) - 2385489..2386946 (+) 1458 WP_234354311.1 sensor histidine kinase -
  AFA_RS11020 (AFA_11035) - 2386951..2388624 (+) 1674 WP_094196965.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38806.52 Da        Isoelectric Point: 5.9852

>NTDB_id=232138 AFA_RS11005 WP_230017900.1 2383500..2384582(-) (recA) [Alcaligenes faecalis strain JQ135]
MDDKNSKAVASERSKALAAALSQIEKQFGKGSIMRYGDDNVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKLKGTCAFIDAEHALDVQYAQKLGVNLGDLLISQPDTGEQALEITEALVRSGSVDLIVIDSVAALTPK
AEIEGDMGDSLPGLQARLMSQALRKLTATIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
RGDEMVGNETRVKVVKNKVAPPFKQTEFDIMYGSGISREGEIIDLGVQTGVVDKAGAWYSYDGNRIGQGKDNVREFLKER
PELAREIENKVREKLGVVLMGAATSRPVTAPVVDPAQGEV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=232138 AFA_RS11005 WP_230017900.1 2383500..2384582(-) (recA) [Alcaligenes faecalis strain JQ135]
ATGGACGATAAAAACAGTAAAGCAGTGGCCTCGGAACGTTCCAAAGCGCTGGCCGCCGCTCTGTCGCAAATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGTTATGGCGACGACAACGTCGAGCATGACATCCAGGTGGTCTCTACGGGTTCGCTGG
GTCTGGACATTGCTTTGGGCGTCGGTGGCTTGCCACGCGGTCGAGTTATTGAGATTTACGGCCCGGAATCCTCGGGTAAA
ACTACGTTGACTCTGCAAGTCATTGCAGAAATGCAAAAACTTAAAGGCACGTGTGCCTTTATTGATGCCGAGCACGCGCT
GGATGTGCAGTACGCGCAAAAGCTGGGCGTGAACCTGGGCGATCTGCTGATCTCTCAGCCCGATACCGGCGAACAGGCCC
TGGAGATTACTGAAGCCCTGGTGCGTTCGGGTTCGGTTGATCTGATCGTTATCGACTCAGTGGCGGCCCTGACTCCCAAG
GCTGAAATCGAAGGCGATATGGGCGATTCCCTGCCCGGTCTGCAAGCCCGCCTGATGAGCCAGGCCTTGCGTAAATTGAC
GGCAACCATCAAGCGCGCCAATTGTATGGTGATCTTCATTAACCAGATTCGTATGAAGATTGGTGTCATGTTCGGCAACC
CTGAAACCACCACGGGTGGTAACGCACTGAAGTTTTATTCTTCCGTGCGTCTGGATATTCGCCGTATCGGTTCCATTAAA
CGTGGCGACGAAATGGTGGGTAACGAAACCCGAGTCAAAGTGGTCAAGAACAAAGTTGCACCGCCTTTCAAGCAAACCGA
ATTTGACATCATGTACGGCAGCGGTATTTCTCGTGAAGGCGAGATTATCGATCTGGGTGTGCAAACGGGCGTGGTCGATA
AGGCGGGCGCTTGGTACAGCTACGACGGCAACCGCATTGGCCAAGGTAAGGACAACGTGCGTGAATTCCTGAAAGAGCGC
CCCGAACTGGCCCGTGAAATCGAAAATAAAGTGCGTGAAAAATTGGGCGTTGTCTTGATGGGCGCCGCAACTAGCCGCCC
AGTTACGGCCCCTGTGGTTGATCCGGCCCAGGGAGAAGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.633

95.278

0.778
  recA Pseudomonas stutzeri DSM 10701

69.855

95.833

0.669
  recA Acinetobacter baumannii D1279779

72.446

89.722

0.65
  recA Acinetobacter baylyi ADP1

71.827

89.722

0.644
  recA Neisseria gonorrhoeae MS11

70.213

91.389

0.642
  recA Neisseria gonorrhoeae MS11

70.213

91.389

0.642
  recA Neisseria gonorrhoeae strain FA1090

70.213

91.389

0.642
  recA Vibrio cholerae strain A1552

71.517

89.722

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

89.722

0.642
  recA Glaesserella parasuis strain SC1401

70.988

90

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

90.556

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

90.833

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

91.389

0.592
  recA Helicobacter pylori 26695

63.939

91.667

0.586
  recA Helicobacter pylori strain NCTC11637

63.636

91.667

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

89.722

0.567
  recA Streptococcus pneumoniae D39

60.237

93.611

0.564
  recA Streptococcus pneumoniae Rx1

60.237

93.611

0.564
  recA Streptococcus pneumoniae R6

60.237

93.611

0.564
  recA Streptococcus pneumoniae TIGR4

60.237

93.611

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

90.556

0.561
  recA Streptococcus mitis SK321

59.118

94.444

0.558
  recA Streptococcus mitis NCTC 12261

59.118

94.444

0.558
  recA Streptococcus pyogenes NZ131

59.403

93.056

0.553
  recA Streptococcus mutans UA159

58.754

93.611

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.471

94.444

0.533

Multiple sequence alignment