Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AM405_RS06245 Genome accession   NZ_CP021550
Coordinates   1314673..1315740 (-) Length   355 a.a.
NCBI ID   WP_004247401.1    Uniprot ID   A0A9Q4SXC1
Organism   Proteus mirabilis strain AR_0159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1309673..1320740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM405_RS06235 (AM405_06235) csrA 1310738..1310926 (-) 189 WP_004244778.1 carbon storage regulator CsrA -
  AM405_RS06240 (AM405_06240) alaS 1311144..1313771 (-) 2628 WP_004244779.1 alanine--tRNA ligase -
  AM405_RS06245 (AM405_06245) recA 1314673..1315740 (-) 1068 WP_004247401.1 recombinase RecA Machinery gene
  AM405_RS06250 (AM405_06250) pncC 1315848..1316354 (-) 507 WP_012367572.1 nicotinamide-nucleotide amidase -
  AM405_RS06255 (AM405_06255) lplT 1316387..1317589 (-) 1203 WP_004252263.1 lysophospholipid transporter LplT -
  AM405_RS06260 (AM405_06260) aas 1317589..1319748 (-) 2160 WP_080544257.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  AM405_RS06265 (AM405_06265) aroL 1319852..1320364 (-) 513 WP_049217169.1 shikimate kinase AroL -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38219.40 Da        Isoelectric Point: 4.9615

>NTDB_id=232012 AM405_RS06245 WP_004247401.1 1314673..1315740(-) (recA) [Proteus mirabilis strain AR_0159]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMNVETISTGSLSLDVALGAGGLPRGRIVEIYGPESSGKTTLTLQV
IASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATNYLKEHPEMYNEL
NTKLREMLLNHAGEFTSAADFAGEESDSDADDTKE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=232012 AM405_RS06245 WP_004247401.1 1314673..1315740(-) (recA) [Proteus mirabilis strain AR_0159]
ATGGCTATTGATGAAAACAAACAAAAAGCATTGGCCGCAGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGTCTGGGCGAAGACCGTTCCATGAACGTAGAAACTATCTCTACAGGATCTTTATCATTAGACGTTGCTTTAGGTG
CAGGTGGATTGCCACGTGGCCGTATTGTTGAAATCTATGGCCCTGAATCTTCTGGTAAAACAACCTTGACTCTACAAGTT
ATTGCCTCTGCTCAGCGTGAAGGAAAAATTTGTGCATTTATTGATGCTGAACATGCATTAGACCCAATTTATGCTCAAAA
GCTAGGTGTCGATATCGATAATCTACTCTGCTCTCAACCTGACACAGGTGAACAAGCACTGGAAATTTGTGATGCATTAT
CTCGCTCTGGTGCGGTCGATGTTATTGTCGTGGACTCCGTGGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACACGTTGGTTTAGCCGCACGTATGATGAGCCAAGCTATGCGTAAACTAGCGGGTAACCTTAAAAACTCTAA
TACACTGCTGATTTTCATTAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAACCCAGAAACCACGACCGGTGGTA
ATGCGCTTAAATTCTATGCTTCTGTTCGTTTAGACATTCGTCGCATTGGCTCTGTCAAAAATGGTGATGAAGTCATTGGT
AGTGAGACTCGCGTTAAAGTTGTTAAAAATAAAGTGGCTGCACCGTTTAAACAAGCTGAATTCCAAATTATGTACGGTGA
AGGTATTAATACCTATGGCGAACTGATTGATTTAGGTGTTAAACATAAGTTAGTAGAGAAAGCAGGTGCTTGGTATAGCT
ACAATGGCGAAAAAATTGGTCAAGGTAAAGCTAACGCAACCAATTACTTAAAAGAACATCCTGAAATGTACAATGAGTTA
AACACTAAATTGCGTGAAATGTTGTTAAATCATGCTGGTGAATTCACAAGTGCTGCGGATTTTGCAGGTGAAGAGTCAGA
CAGTGATGCTGACGACACAAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.05

96.62

0.783
  recA Vibrio cholerae strain A1552

81.05

96.62

0.783
  recA Pseudomonas stutzeri DSM 10701

72.046

97.746

0.704
  recA Acinetobacter baylyi ADP1

71.014

97.183

0.69
  recA Glaesserella parasuis strain SC1401

68.605

96.901

0.665
  recA Acinetobacter baumannii D1279779

72.171

92.113

0.665
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.831

0.637
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.606

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.047

96.901

0.592
  recA Streptococcus pneumoniae R6

62.13

95.211

0.592
  recA Streptococcus pneumoniae Rx1

62.13

95.211

0.592
  recA Streptococcus pneumoniae D39

62.13

95.211

0.592
  recA Streptococcus pneumoniae TIGR4

62.13

95.211

0.592
  recA Helicobacter pylori 26695

63.609

92.113

0.586
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Lactococcus lactis subsp. cremoris KW2

63.385

91.549

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.423

0.58
  recA Streptococcus pyogenes NZ131

63.077

91.549

0.577
  recA Streptococcus mitis NCTC 12261

63.158

90.986

0.575
  recA Streptococcus mitis SK321

63.158

90.986

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

91.549

0.575
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

93.239

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.423

0.541

Multiple sequence alignment